Os12g0600400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Pyridoxal kinase.
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Os12g0600400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Pyridoxal kinase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 50.24 | 0.333 | 10.1 | -1.19 | 0.407 | 1.33 | -0.58 | -1.6 | -0.457 | 7.99 | 15.8 | 344 | -- | -- |
| 51.86 | 0.335 | 10.1 | -0.921 | 0.379 | 1.33 | -0.332 | -- | -0.373 | 8.12 | 14.54 | 318 | -- | -- |
| 50.97 | 0.333 | 10.1 | -1.14 | 0.413 | 1.32 | -- | -1.29 | -0.436 | 8.54 | 15.43 | 358 | -- | -- |
| 52.12 | 0.336 | 10.1 | -0.932 | 0.397 | 1.34 | -- | -- | -0.377 | 8.53 | 13.25 | 338 | -- | -- |
| 54.85 | 0.345 | 10.1 | -1.02 | -- | 1.25 | -- | -1.01 | -0.396 | -- | 14.75 | 14 | -- | -- |
| 71.09 | 0.395 | 10.1 | -0.649 | 0.322 | -- | 0.219 | -- | -0.185 | 13 | -- | -- | -- | -- |
| 71.26 | 0.395 | 10.1 | -0.642 | 0.321 | -- | -- | -- | -0.184 | 12.7 | -- | -- | -- | -- |
| 55.72 | 0.348 | 10.1 | -0.884 | -- | 1.24 | -- | -- | -0.357 | -- | 10.93 | 18 | -- | -- |
| 72.52 | 0.397 | 10.1 | -- | 0.31 | 0.738 | -- | -- | -0.218 | 9.01 | 20.19 | 266 | -- | -- |
| 77.72 | 0.412 | 10.1 | -0.654 | -- | -- | -- | -- | -0.19 | -- | -- | -- | -- | -- |
| 82.13 | 0.424 | 10 | -- | 0.331 | -- | -- | -- | -0.112 | 12.8 | -- | -- | -- | -- |
| 74.85 | 0.404 | 10.1 | -- | -- | 0.775 | -- | -- | -0.225 | -- | 19.44 | 18 | -- | -- |
| 89 | 0.44 | 10 | -- | -- | -- | -- | -- | -0.117 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 43.41 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 3 |
| 22 | 45.19 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 25 | 45.31 | humidity | 90 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 27 | 45.40 | humidity | 80 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 28 | 45.43 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 5 |
| 36 | 45.58 | humidity | 90 | 14400 | < th | dose independent | rect. | 18 | 5 |
| 47 | 45.78 | humidity | 80 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 57 | 45.93 | humidity | 90 | 14400 | > th | dose dependent | sin | 16 | NA |
| 79 | 46.26 | humidity | 90 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 100 | 46.53 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 18 |
| 102 | 46.55 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 17 |
| 112 | 46.71 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 126 | 46.81 | temperature | 15 | 720 | > th | dose dependent | sin | 5 | NA |
| 133 | 46.85 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 20 |
| 178 | 47.11 | humidity | 90 | 4320 | > th | dose dependent | rect. | 6 | 2 |
| 283 | 47.65 | humidity | 90 | 14400 | > th | dose dependent | rect. | 15 | 19 |
| 296 | 47.70 | humidity | 90 | 14400 | > th | dose independent | sin | 17 | NA |
| 338 | 47.81 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 392 | 47.93 | humidity | 80 | 14400 | < th | dose independent | rect. | 11 | 8 |
| 394 | 47.93 | humidity | 90 | 14400 | > th | dose independent | rect. | 9 | 16 |
| 395 | 47.93 | humidity | 90 | 14400 | > th | dose dependent | rect. | 9 | 23 |
| 400 | 47.94 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 409 | 47.96 | humidity | 80 | 14400 | > th | dose independent | rect. | 10 | 10 |
| 487 | 48.13 | humidity | 90 | 14400 | < th | dose independent | sin | 18 | NA |
| 613 | 48.41 | humidity | 80 | 14400 | < th | dose independent | rect. | 8 | 11 |
| 643 | 48.47 | humidity | 80 | 14400 | > th | dose independent | rect. | 6 | 14 |
| 707 | 48.60 | humidity | 70 | 14400 | > th | dose dependent | rect. | 12 | 7 |
| 859 | 48.86 | temperature | 30 | 720 | < th | dose dependent | sin | 6 | NA |
| 865 | 48.87 | humidity | 90 | 14400 | > th | dose independent | rect. | 17 | 18 |
| 939 | 48.99 | temperature | 15 | 1440 | > th | dose dependent | rect. | 23 | 10 |
| 953 | 49.01 | humidity | 80 | 14400 | > th | dose independent | sin | 22 | NA |
| 1000 | 49.05 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 16 |