BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0600400 Os12g0600400|AK066514
(309 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G37850.1 | chr5:15065394-15068783 FORWARD LENGTH=344 476 e-135
AT1G22940.1 | chr1:8122384-8124908 FORWARD LENGTH=523 48 8e-06
>AT5G37850.1 | chr5:15065394-15068783 FORWARD LENGTH=344
Length = 343
Score = 476 bits (1224), Expect = e-135, Method: Compositional matrix adjust.
Identities = 230/309 (74%), Positives = 263/309 (85%)
Query: 1 MARPPVLSVALPSDTGRVLSIQSHTVQGYVGNKSAVFPLQLLGFDVDPINSVQFSNHTGY 60
M PPVLS+ALPSDTGRVLSIQSHTVQGYVGNKSAVFPLQLLG+DVDPINSVQFSNHTGY
Sbjct: 35 MTTPPVLSLALPSDTGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPINSVQFSNHTGY 94
Query: 61 PTFRGQVLNGSQLWDLIEGLAENDLLHYTHLLTGYIGSVSFLTTVLQVVDKLRSVNPDLV 120
PTF+GQVLNG QL DLIEGL NDLL YTH+LTGYIGSVSFL T+L+V++KLRSVNP+L
Sbjct: 95 PTFKGQVLNGQQLCDLIEGLEANDLLFYTHVLTGYIGSVSFLDTILEVINKLRSVNPNLT 154
Query: 121 YVCDPVLGDEGKLYVPQDLISVYQQKVVPVATMLTPNQFEVELLTGLRITCEEDGLKACN 180
YVCDPV+GDEGKLYVP++L+ VY++KVVP+A+MLTPNQFE E LTGLRI EEDG +AC
Sbjct: 155 YVCDPVMGDEGKLYVPEELVHVYREKVVPLASMLTPNQFEAEKLTGLRINSEEDGREACA 214
Query: 181 ALHSAGPRKVVITSALIEDKLLLIGSHKKAKEQPPEQFKIEIPKIPAYFXXXXXXXXXXX 240
LH+AGP KVVITS I LLLIGSH+K K PEQFKI I KIPAYF
Sbjct: 215 ILHAAGPSKVVITSITIGGILLLIGSHQKEKGLKPEQFKILIHKIPAYFTGTGDLMTALL 274
Query: 241 XXWSNKYPDNLERAAELAVSSLQALLRRTVEDYKRAGFDPSTSSLEIRLIQSQDEIRRPQ 300
WSNKYPDNL++AAELAVS+LQALLRRT++DYKRAG+DP++SSLEIRLIQSQ++IR P+
Sbjct: 275 LGWSNKYPDNLDKAAELAVSTLQALLRRTLDDYKRAGYDPTSSSLEIRLIQSQEDIRNPK 334
Query: 301 ITCKAVKYS 309
+ KA +YS
Sbjct: 335 VELKAERYS 343
>AT1G22940.1 | chr1:8122384-8124908 FORWARD LENGTH=523
Length = 522
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 54/109 (49%), Gaps = 6/109 (5%)
Query: 93 TGYIGSVSFLTTVLQVVDKLRSVNPDLVYVCDPVL-GDEGKLYVPQDLISVYQQKVVPVA 151
TG + S + +LQ + P V DPV+ G + ++S+++++++P+A
Sbjct: 105 TGMLPSTEIVEVLLQNLSDF----PVRALVVDPVMVSTSGHVLAGSSILSIFRERLLPIA 160
Query: 152 TMLTPNQFEVE-LLTGLRITCEEDGLKACNALHSAGPRKVVITSALIED 199
++TPN E LL G RI + A +LH GPR V++ + D
Sbjct: 161 DIITPNVKEASALLDGFRIETVAEMRSAAKSLHEMGPRFVLVKGGDLPD 209
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.136 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,388,074
Number of extensions: 252146
Number of successful extensions: 572
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 572
Number of HSP's successfully gapped: 2
Length of query: 309
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 211
Effective length of database: 8,419,801
Effective search space: 1776578011
Effective search space used: 1776578011
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 111 (47.4 bits)