BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0600400 Os12g0600400|AK066514
         (309 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os12g0600400  Similar to Pyridoxal kinase                         602   e-173

>Os12g0600400 Similar to Pyridoxal kinase
          Length = 309

 Score =  602 bits (1553), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 296/309 (95%), Positives = 296/309 (95%)

Query: 1   MARPPVLSVALPSDTGRVLSIQSHTVQGYVGNKSAVFPLQLLGFDVDPINSVQFSNHTGY 60
           MARPPVLSVALPSDTGRVLSIQSHTVQGYVGNKSAVFPLQLLGFDVDPINSVQFSNHTGY
Sbjct: 1   MARPPVLSVALPSDTGRVLSIQSHTVQGYVGNKSAVFPLQLLGFDVDPINSVQFSNHTGY 60

Query: 61  PTFRGQVLNGSQLWDLIEGLAENDLLHYTHLLTGYIGSVSFLTTVLQVVDKLRSVNPDLV 120
           PTFRGQVLNGSQLWDLIEGLAENDLLHYTHLLTGYIGSVSFLTTVLQVVDKLRSVNPDLV
Sbjct: 61  PTFRGQVLNGSQLWDLIEGLAENDLLHYTHLLTGYIGSVSFLTTVLQVVDKLRSVNPDLV 120

Query: 121 YVCDPVLGDEGKLYVPQDLISVYQQKVVPVATMLTPNQFEVELLTGLRITCEEDGLKACN 180
           YVCDPVLGDEGKLYVPQDLISVYQQKVVPVATMLTPNQFEVELLTGLRITCEEDGLKACN
Sbjct: 121 YVCDPVLGDEGKLYVPQDLISVYQQKVVPVATMLTPNQFEVELLTGLRITCEEDGLKACN 180

Query: 181 ALHSAGPRKVVITSALIEDKLLLIGSHKKAKEQPPEQFKIEIPKIPAYFXXXXXXXXXXX 240
           ALHSAGPRKVVITSALIEDKLLLIGSHKKAKEQPPEQFKIEIPKIPAYF           
Sbjct: 181 ALHSAGPRKVVITSALIEDKLLLIGSHKKAKEQPPEQFKIEIPKIPAYFTGTGDLTTALL 240

Query: 241 XXWSNKYPDNLERAAELAVSSLQALLRRTVEDYKRAGFDPSTSSLEIRLIQSQDEIRRPQ 300
             WSNKYPDNLERAAELAVSSLQALLRRTVEDYKRAGFDPSTSSLEIRLIQSQDEIRRPQ
Sbjct: 241 LGWSNKYPDNLERAAELAVSSLQALLRRTVEDYKRAGFDPSTSSLEIRLIQSQDEIRRPQ 300

Query: 301 ITCKAVKYS 309
           ITCKAVKYS
Sbjct: 301 ITCKAVKYS 309



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.136    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,788,095
Number of extensions: 370496
Number of successful extensions: 889
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 889
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 208
Effective length of database: 11,762,187
Effective search space: 2446534896
Effective search space used: 2446534896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 156 (64.7 bits)