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Os12g0578400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Glycoside hydrolase family 79, N-terminal protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.57 (0.0308) R2 : 0.778
β1 : -1.91 (0.111) R2dD : 0.148 R2D : 0.118
β2 : 1.21 (0.133) R2dC : 0.135 R2C : 0.417
β3 : 1.27 (0.108) R2dE : 0.223 R2E : 0.5
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.233 (0.0653) R2dN8 : 0.00838 R2N8 : -0.0016
σ : 0.569
deviance : 149.3
__
_____
C
peak time of C : 22.5
E
wheather : radiation
threshold : 12.2
memory length : 47
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
145.61 0.567 8.57 -1.88 1.21 1.26 0.607 0.315 -0.229 22.6 11.91 38 -- --
145.72 0.562 8.57 -1.87 1.21 1.26 0.948 -- -0.225 22.6 11.45 47 -- --
145.93 0.563 8.57 -1.89 1.23 1.25 -- 0.766 -0.235 22.5 11.93 46 -- --
149.3 0.569 8.57 -1.91 1.21 1.27 -- -- -0.233 22.5 12.2 47 -- --
167.44 0.603 8.54 -1.93 -- 2.04 -- 0.851 -0.215 -- 10.64 27 -- --
171.21 0.613 8.61 -1.87 2.55 -- 0.95 -- -0.326 23.4 -- -- -- --
175.1 0.62 8.62 -1.91 2.55 -- -- -- -0.33 23.4 -- -- -- --
168.95 0.605 8.53 -1.93 -- 2.08 -- -- -0.192 -- 10.96 23 -- --
243.68 0.727 8.52 -- 1.26 1.29 -- -- -0.0261 22.4 17.14 47 -- --
582.77 1.13 8.56 -1.84 -- -- -- -- -0.304 -- -- -- -- --
271.17 0.77 8.57 -- 2.53 -- -- -- -0.117 23.4 -- -- -- --
263.94 0.757 8.49 -- -- 2.11 -- -- -0.0114 -- 13.12 16 -- --
672.27 1.21 8.51 -- -- -- -- -- -0.0993 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 137.42 radiation 10.0 90 < th dose dependent rect. 1 17
3 138.15 radiation 10.0 30 < th dose dependent sin 2 NA
5 138.30 temperature 20.0 270 > th dose independent rect. 1 2
7 138.46 precipitation 0.1 270 < th dose independent rect. 3 22
8 138.46 precipitation 0.1 270 < th dose dependent rect. 3 22
9 138.53 radiation 1.0 90 < th dose independent sin 2 NA
10 138.54 radiation 1.0 90 > th dose independent sin 2 NA
11 138.60 humidity 80.0 10 > th dose dependent rect. 2 18
13 138.70 humidity 80.0 10 > th dose dependent rect. 2 20
16 138.86 temperature 20.0 270 > th dose independent rect. 24 4
17 138.86 humidity 80.0 10 > th dose dependent rect. 24 23
19 139.01 radiation 1.0 90 < th dose independent rect. 1 18
21 139.04 temperature 10.0 10 > th dose dependent rect. 6 20
51 140.16 radiation 30.0 30 < th dose dependent rect. 12 18
53 140.19 humidity 80.0 10 > th dose dependent rect. 2 16
59 140.27 radiation 1.0 270 < th dose dependent rect. 23 20
60 140.33 radiation 1.0 270 < th dose independent rect. 23 20
98 141.15 precipitation 0.1 270 < th dose independent rect. 5 19
99 141.15 precipitation 0.1 270 < th dose dependent rect. 5 19
114 141.54 atmosphere 1000.0 270 > th dose independent rect. 1 2
123 141.65 wind 9.0 270 < th dose independent rect. 3 22
127 141.67 temperature 10.0 270 > th dose dependent rect. 1 2
131 141.70 humidity 50.0 270 > th dose dependent rect. 1 2
144 141.84 radiation 20.0 10 < th dose dependent rect. 10 20
162 142.10 temperature 20.0 10 > th dose independent rect. 1 5
169 142.17 atmosphere 1000.0 270 > th dose independent rect. 24 5
175 142.23 radiation 10.0 90 < th dose dependent rect. 24 23
181 142.31 humidity 80.0 270 > th dose independent rect. 1 2
183 142.39 precipitation 0.1 270 < th dose independent rect. 1 2
184 142.39 precipitation 0.1 270 < th dose dependent rect. 1 2
190 142.45 temperature 10.0 270 > th dose independent rect. 1 2
192 142.45 temperature 30.0 270 < th dose independent rect. 1 2
193 142.45 humidity 50.0 270 > th dose independent rect. 1 2
197 142.45 atmosphere 1010.0 270 < th dose independent rect. 1 2
199 142.45 radiation 1.0 270 < th dose independent rect. 1 2
205 142.45 temperature 25.0 30 < th dose independent rect. 2 18
206 142.45 temperature 10.0 270 > th dose independent rect. 3 22
207 142.45 radiation 1.0 270 < th dose dependent rect. 1 2
214 142.47 humidity 70.0 10 > th dose dependent rect. 2 4
215 142.48 humidity 90.0 30 > th dose independent rect. 2 4
218 142.51 wind 9.0 270 < th dose independent rect. 1 2
221 142.53 humidity 50.0 10 > th dose dependent rect. 13 17
226 142.58 wind 7.0 270 < th dose independent rect. 5 19
232 142.66 temperature 10.0 270 > th dose dependent rect. 24 5
237 142.70 precipitation 0.1 10 < th dose independent rect. 6 20
238 142.70 precipitation 0.1 10 < th dose dependent rect. 6 20
251 142.83 radiation 10.0 30 < th dose dependent rect. 2 10
287 143.12 wind 9.0 10 < th dose independent rect. 6 20
294 143.16 humidity 60.0 90 > th dose dependent rect. 1 5
296 143.18 radiation 1.0 270 < th dose dependent rect. 24 5
303 143.23 radiation 10.0 30 < th dose independent rect. 2 12
315 143.29 radiation 1.0 270 < th dose independent rect. 24 5
326 143.32 atmosphere 1010.0 270 < th dose independent rect. 24 5
330 143.33 temperature 10.0 270 > th dose independent rect. 24 5
332 143.33 temperature 30.0 270 < th dose independent rect. 24 5
333 143.33 humidity 50.0 270 > th dose independent rect. 24 5
340 143.33 temperature 10.0 270 > th dose independent rect. 5 19
346 143.36 wind 9.0 270 < th dose independent rect. 24 5
353 143.40 temperature 10.0 10 > th dose dependent rect. 2 4
370 143.50 radiation 20.0 90 < th dose independent rect. 13 17
376 143.53 atmosphere 1000.0 10 > th dose independent rect. 2 4
404 143.68 wind 9.0 270 < th dose dependent rect. 5 19
417 143.77 wind 9.0 10 < th dose independent rect. 2 4
418 143.77 temperature 10.0 10 > th dose independent rect. 2 4
420 143.77 temperature 30.0 10 < th dose independent rect. 2 4
421 143.77 humidity 50.0 10 > th dose independent rect. 2 4
425 143.77 atmosphere 1010.0 10 < th dose independent rect. 2 4
427 143.77 radiation 20.0 10 < th dose independent rect. 2 4
430 143.77 temperature 10.0 10 > th dose independent rect. 6 20
461 143.82 radiation 40.0 10 < th dose dependent rect. 2 4
462 143.84 precipitation 0.1 270 < th dose independent rect. 24 5
463 143.84 precipitation 0.1 270 < th dose dependent rect. 24 5
496 144.03 humidity 50.0 10 > th dose dependent rect. 15 15
509 144.13 radiation 30.0 1440 < th dose independent rect. 3 4
587 144.39 wind 7.0 270 < th dose independent rect. 19 14
601 144.44 humidity 90.0 30 > th dose independent rect. 2 18
614 144.47 wind 9.0 10 < th dose dependent rect. 2 4
658 144.55 radiation 10.0 30 < th dose independent rect. 24 23
682 144.61 radiation 20.0 10 < th dose dependent rect. 8 22
733 144.86 humidity 90.0 10 > th dose independent rect. 2 16
753 144.91 wind 9.0 1440 < th dose independent rect. 3 4
754 144.91 temperature 10.0 1440 > th dose independent rect. 3 4
757 144.91 temperature 30.0 1440 < th dose independent rect. 3 4
761 144.91 humidity 50.0 1440 > th dose independent rect. 3 4
766 144.91 atmosphere 995.0 1440 > th dose independent rect. 3 4
771 144.91 temperature 10.0 1440 > th dose independent rect. 7 20
788 144.97 wind 1.0 270 > th dose independent rect. 1 2
792 144.98 atmosphere 995.0 270 > th dose dependent rect. 1 2
800 145.00 precipitation 0.1 10 < th dose independent rect. 2 4
802 145.00 precipitation 0.1 10 < th dose dependent rect. 2 4
810 145.02 wind 3.0 10 < th dose dependent rect. 2 4
825 145.07 radiation 10.0 30 < th dose independent rect. 2 8
851 145.14 wind 9.0 270 < th dose dependent rect. 1 2
880 145.24 humidity 70.0 14400 > th dose independent rect. 22 5
971 145.45 humidity 50.0 270 > th dose independent rect. 24 19