BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0578400 Os12g0578400|AK060767
(539 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G07830.1 | chr5:2504168-2506567 FORWARD LENGTH=544 668 0.0
AT5G61250.2 | chr5:24632294-24634597 REVERSE LENGTH=540 664 0.0
AT5G34940.2 | chr5:13235912-13238718 REVERSE LENGTH=537 496 e-140
>AT5G07830.1 | chr5:2504168-2506567 FORWARD LENGTH=544
Length = 543
Score = 668 bits (1724), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 308/530 (58%), Positives = 397/530 (74%), Gaps = 4/530 (0%)
Query: 10 LLCFPTLIRSEDYSDVTIVVRGAETIASTSNEFICATIDWWPPEKCNYDQCPWGQASILN 69
LL P +++ +IV++GA + T F+CAT+DWWP +KCNYDQCPWG +S++N
Sbjct: 15 LLLVPEKTMAQEMKRASIVIQGARRVCETDENFVCATLDWWPHDKCNYDQCPWGYSSVIN 74
Query: 70 LDLTNPLLAKAIQAFSPLRIRLGGSLQDQVVYGTPNLGSPCTPXXXXXXXXXXXXXXCIT 129
+DLT PLL KAI+AF PLRIR+GGSLQDQV+Y NL +PC P C+
Sbjct: 75 MDLTRPLLTKAIKAFKPLRIRIGGSLQDQVIYDVGNLKTPCRPFQKMNSGLFGFSKGCLH 134
Query: 130 MERWDAINKIFMDTGAVVTFGLNALQGRQQMGRGVWGGAWNSSNAREFMEYTVSMNYPID 189
M+RWD +N TGAVVTFGLNAL+GR ++ WGGAW+ N ++F+ YTVS Y ID
Sbjct: 135 MKRWDELNSFLTATGAVVTFGLNALRGRHKLRGKAWGGAWDHINTQDFLNYTVSKGYVID 194
Query: 190 SWEFGNELSGSGIGASVGAEQYGKDIIELKNIISQLYGNS--RKPLVVAPGGFYDQKWYA 247
SWEFGNELSGSG+GASV AE YGKD+I LK++I+++Y NS KP++VAPGGFY+Q+WY
Sbjct: 195 SWEFGNELSGSGVGASVSAELYGKDLIVLKDVINKVYKNSWLHKPILVAPGGFYEQQWYT 254
Query: 248 QLLDISGPNVLDTMTHHIYNLGAGNDPQVANRILNPQYLSQSSDTFRDLQMTIQRHGPWS 307
+LL+ISGP+V+D +THHIYNLG+GNDP + +I++P YLSQ S TF+D+ TIQ HGPW+
Sbjct: 255 KLLEISGPSVVDVVTHHIYNLGSGNDPALVKKIMDPSYLSQVSKTFKDVNQTIQEHGPWA 314
Query: 308 APWVGEAGGAYNSGSRKVSNTFLNSFWYLDQLGQSAKYDTKVYCRQTLIGGNYGLLDTET 367
+PWVGE+GGAYNSG R VS+TF++SFWYLDQLG SA+++TKVYCRQTL+GG YGLL+ T
Sbjct: 315 SPWVGESGGAYNSGGRHVSDTFIDSFWYLDQLGMSARHNTKVYCRQTLVGGFYGLLEKGT 374
Query: 368 FVPNPDYYSALLWHRLMGKGVISLDTSGSSYLRAYAHCGKQKGGVALLMLNLNKNMGFMV 427
FVPNPDYYSALLWHRLMGKGV+++ T G LR YAHC K + GV LL++NL+ F V
Sbjct: 375 FVPNPDYYSALLWHRLMGKGVLAVQTDGPPQLRVYAHCSKGRAGVTLLLINLSNQSDFTV 434
Query: 428 SVRNDLNINFREMAGIKRDNSFVHGLKRTVSWVGSKASDGLEKREEYHLTPQDGNPFART 487
SV N +N+ A ++ S + LKR SW+GSKASDG REEYHLTP++G ++T
Sbjct: 435 SVSNGINVVLN--AESRKKKSLLDTLKRPFSWIGSKASDGYLNREEYHLTPENGVLRSKT 492
Query: 488 VLLNGAPLQLTGDGDIPSLPPVMVSVNSPIYVAPLSIAFVVFPDFEAEGC 537
++LNG L+ T GDIPSL PV+ SVNSP+ V PLS++F+V P+F+A C
Sbjct: 493 MVLNGKSLKPTATGDIPSLEPVLRSVNSPLNVLPLSMSFIVLPNFDASAC 542
>AT5G61250.2 | chr5:24632294-24634597 REVERSE LENGTH=540
Length = 539
Score = 664 bits (1714), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 310/533 (58%), Positives = 393/533 (73%), Gaps = 3/533 (0%)
Query: 6 LIPLLLCFPTLIRSEDYSDVTIVVRGAETIASTSNEFICATIDWWPPEKCNYDQCPWGQA 65
+ LL P + + T+V+ G+ IA T FICAT+DWWPPEKCNYDQCPWG A
Sbjct: 8 FLSCLLLLPPVTFGSNMERTTLVIDGSRRIAETDENFICATLDWWPPEKCNYDQCPWGYA 67
Query: 66 SILNLDLTNPLLAKAIQAFSPLRIRLGGSLQDQVVYGTPNLGSPCTPXXXXXXXXXXXXX 125
S++NL+L +PLLAKAIQAF LRIR+GGSLQDQV+Y +L +PCT
Sbjct: 68 SLINLNLASPLLAKAIQAFRTLRIRIGGSLQDQVIYDVGDLKTPCTQFKKTDDGLFGFSE 127
Query: 126 XCITMERWDAINKIFMDTGAVVTFGLNALQGRQQMGRGVWGGAWNSSNAREFMEYTVSMN 185
C+ M+RWD +N F TGA+VTFGLNAL GR ++ WGG W+ +N ++FM YTVS
Sbjct: 128 GCLYMKRWDEVNHFFNATGAIVTFGLNALHGRNKLNGTAWGGDWDHTNTQDFMNYTVSKG 187
Query: 186 YPIDSWEFGNELSGSGIGASVGAEQYGKDIIELKNIISQLYGNSR-KPLVVAPGGFYDQK 244
Y IDSWEFGNELSGSGI ASV E YGKD+I LKN+I +Y NSR KPLVVAPGGF++++
Sbjct: 188 YAIDSWEFGNELSGSGIWASVSVELYGKDLIVLKNVIKNVYKNSRTKPLVVAPGGFFEEQ 247
Query: 245 WYAQLLDISGPNVLDTMTHHIYNLGAGNDPQVANRILNPQYLSQSSDTFRDLQMTIQRHG 304
WY++LL +SGP VLD +THHIYNLG GNDP++ N+IL+P YLS S+ F ++ TIQ HG
Sbjct: 248 WYSELLRLSGPGVLDVLTHHIYNLGPGNDPKLVNKILDPNYLSGISELFANVNQTIQEHG 307
Query: 305 PWSAPWVGEAGGAYNSGSRKVSNTFLNSFWYLDQLGQSAKYDTKVYCRQTLIGGNYGLLD 364
PW+A WVGEAGGA+NSG R+VS TF+NSFWYLDQLG S+K++TKVYCRQ L+GG YGLL+
Sbjct: 308 PWAAAWVGEAGGAFNSGGRQVSETFINSFWYLDQLGISSKHNTKVYCRQALVGGFYGLLE 367
Query: 365 TETFVPNPDYYSALLWHRLMGKGVISLDTSGSSYLRAYAHCGKQKGGVALLMLNLNKNMG 424
ETFVPNPDYYSALLWHRLMGKG++ + T+ S YLRAY HC K++ G+ +L++NL+K+
Sbjct: 368 KETFVPNPDYYSALLWHRLMGKGILGVQTTASEYLRAYVHCSKRRAGITILLINLSKHTT 427
Query: 425 FMVSVRNDLNINFREMAGIKRDNSFVHGLKRTVSWVGSKASDGLEKREEYHLTPQDGNPF 484
F V+V N + + + +KR SF+ +K VSWVG+KASDG REEYHL+P+DG+
Sbjct: 428 FTVAVSNGVKVVL-QAESMKR-KSFLETIKSKVSWVGNKASDGYLNREEYHLSPKDGDLR 485
Query: 485 ARTVLLNGAPLQLTGDGDIPSLPPVMVSVNSPIYVAPLSIAFVVFPDFEAEGC 537
++ +LLNG PL T GDIP L PV V SP+Y+ PLSI+F+V P F+A C
Sbjct: 486 SKIMLLNGKPLVPTATGDIPKLEPVRHGVKSPVYINPLSISFIVLPTFDAPAC 538
>AT5G34940.2 | chr5:13235912-13238718 REVERSE LENGTH=537
Length = 536
Score = 496 bits (1277), Expect = e-140, Method: Compositional matrix adjust.
Identities = 248/546 (45%), Positives = 329/546 (60%), Gaps = 24/546 (4%)
Query: 2 RLWFLIPLLLCFPTLIRSEDYSDV----TIVVRGAETIASTSNEFICATIDWWPPEKCNY 57
R I L LC + S V T+ V G + + +FICAT+DWWPPEKC+Y
Sbjct: 4 RQILAIVLFLCVFQFLDCTVSSAVEENGTVFVYGRAAVGTIDEDFICATLDWWPPEKCDY 63
Query: 58 DQCPWGQASILNLDLTNPLLAKAIQAFSPLRIRLGGSLQDQVVYGTPNLGSPCTPXXXXX 117
C W ASILNLDL N +L AI+AF+PL+IR+GG+LQD V+Y TP+ PC P
Sbjct: 64 GSCSWDHASILNLDLNNVILQNAIKAFAPLKIRIGGTLQDIVIYETPDSKQPCLPFTKNS 123
Query: 118 XXXXXXXXXCITMERWDAINKIFMDTGAVVTFGLNALQGRQQMGRGVWGGAWNSSNAREF 177
C+ M RWD +N F TG V FGLNAL GR G GAWN +NA F
Sbjct: 124 SILFGYTQGCLPMRRWDELNAFFRKTGTKVIFGLNALSGRSIKSNGEAIGAWNYTNAESF 183
Query: 178 MEYTVSMNYPIDSWEFGNELSGSGIGASVGAEQYGKDIIELKNIISQLYGN-SRKPLVVA 236
+ +T NY ID WE GNEL GSG+GA VGA QY D I L+NI++++Y N S PLV+
Sbjct: 184 IRFTAENNYTIDGWELGNELCGSGVGARVGANQYAIDTINLRNIVNRVYKNVSPMPLVIG 243
Query: 237 PGGFYDQKWYAQLLDISGPNVLDTMTHHIYNLGAGNDPQVANRILNPQYLSQSSDTFRDL 296
PGGF++ W+ + L+ N L+ T HIY+LG G D + +ILNP YL Q + +FR L
Sbjct: 244 PGGFFEVDWFTEYLN-KAENSLNATTRHIYDLGPGVDEHLIEKILNPSYLDQEAKSFRSL 302
Query: 297 QMTIQRHGPWSAPWVGEAGGAYNSGSRKVSNTFLNSFWYLDQLGQSAKYDTKVYCRQTLI 356
+ I+ + WVGE+GGAYNSG VSN F+ SFWYLDQLG ++ YDTK YCRQ+LI
Sbjct: 303 KNIIKNSSTKAVAWVGESGGAYNSGRNLVSNAFVYSFWYLDQLGMASLYDTKTYCRQSLI 362
Query: 357 GGNYGLLDTETFVPNPDYYSALLWHRLMGKGVISLDTSGSSYLRAYAHCGKQKGGVALLM 416
GGNYGLL+T F PNPDYYSAL+W +LMG+ + SG+ +R+Y HC +Q G+ +L+
Sbjct: 363 GGNYGLLNTTNFTPNPDYYSALIWRQLMGRKALFTTFSGTKKIRSYTHCARQSKGITVLL 422
Query: 417 LNLNKNMGFMVSVRNDLNINF-----REMAGIKRDNSFVHGLKRTVSWVGSKASDGLEKR 471
+NL+ + V +LN +F + M KR +S + G +G+ +R
Sbjct: 423 MNLDNTTTVVAKV--ELNNSFSLRHTKHMKSYKRASSQLFG-----------GPNGVIQR 469
Query: 472 EEYHLTPQDGNPFARTVLLNGAPLQLTGDGDIPSLPPVMVSVNSPIYVAPLSIAFVVFPD 531
EEYHLT +DGN ++T+LLNG LQ+ GD+P + P+ ++ PI +AP SI FV +
Sbjct: 470 EEYHLTAKDGNLHSQTMLLNGNALQVNSMGDLPPIEPIHINSTEPITIAPYSIVFVHMRN 529
Query: 532 FEAEGC 537
C
Sbjct: 530 VVVPAC 535
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.137 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 12,223,582
Number of extensions: 538893
Number of successful extensions: 1057
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1050
Number of HSP's successfully gapped: 3
Length of query: 539
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 436
Effective length of database: 8,282,721
Effective search space: 3611266356
Effective search space used: 3611266356
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 114 (48.5 bits)