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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0577200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.68 (0.0529) R2 : 0.413
β1 : -3.23 (0.211) R2dD : 0.39 R2D : 0.166
β2 : 1.92 (0.195) R2dC : 0.312 R2C : -0.303
β3 : 3.07 (0.251) R2dE : 0.503 R2E : -0.224
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -3.88 (0.75) R2dD*E : 0.0419 R2D*E : -0.0579
γ1 : -0.251 (0.115) R2dN8 : 0.00874 R2N8 : -0.0322
σ : 0.96
deviance : 425.27
__
_____
C
peak time of C : 1.2
E
wheather : temperature
threshold : 12.6
memory length : 98
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 3.02
open length of G : 18.2

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
425.48 0.969 5.68 -3.27 1.93 2.98 -1.11 -4.82 -0.247 1.05 10.43 88 3.12 18.1
441.15 0.978 5.66 -2.88 2.11 3.18 1.09 -- -0.18 1.13 11.73 80 3.18 18.1
425.27 0.96 5.68 -3.23 1.92 3.07 -- -3.88 -0.251 1.2 12.6 98 3.02 18.2
448.65 0.987 5.62 -2.74 1.85 2.87 -- -- -0.107 1.15 11.61 87 3.1 18.2
474.46 1.01 5.71 -3.5 -- 2.4 -- -2.97 -0.371 -- 8.065 1630 1.53 19.5
567.41 1.12 5.53 -2.23 0.172 -- 1.07 -- 0.178 23 -- -- -- --
571.4 1.12 5.54 -2.27 0.215 -- -- -- 0.178 20.5 -- -- -- --
485.12 1.03 5.62 -2.98 -- 2.28 -- -- -0.222 -- 11.3 1536 3.03 19.8
632.31 1.17 5.54 -- 1.4 2.05 -- -- 0.308 0.629 6.33 69 3.21 18.3
573.99 1.12 5.53 -2.27 -- -- -- -- 0.176 -- -- -- -- --
706.79 1.24 5.48 -- 0.228 -- -- -- 0.431 19.8 -- -- -- --
683.54 1.22 5.48 -- -- 0.826 -- -- 0.39 -- 11.3 1536 3.03 19.8
709.6 1.24 5.48 -- -- -- -- -- 0.428 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 427.41 temperature 10 90 > th dose dependent rect. 3 18
4 432.42 temperature 10 270 > th dose dependent rect. 3 16
9 437.31 temperature 10 270 > th dose dependent rect. 24 21
16 438.75 temperature 15 270 > th dose dependent rect. 1 19
48 446.58 temperature 15 270 > th dose dependent rect. 14 19
49 446.75 temperature 15 270 > th dose dependent rect. 13 21
92 454.51 temperature 20 90 > th dose independent rect. 3 18
101 456.39 temperature 25 1440 > th dose dependent rect. 16 1
111 457.58 temperature 25 1440 > th dose dependent rect. 15 4
124 458.74 humidity 50 90 > th dose dependent rect. 11 16
143 460.22 temperature 20 270 > th dose dependent rect. 14 6
187 462.75 temperature 15 270 > th dose dependent rect. 13 8
193 463.29 radiation 1 270 < th dose dependent rect. 5 22
220 464.62 temperature 25 1440 > th dose dependent sin 19 NA
248 465.44 temperature 25 1440 > th dose dependent rect. 12 20
268 466.01 temperature 20 10 > th dose independent rect. 4 17
282 466.23 radiation 30 4320 < th dose independent rect. 22 10
292 466.36 humidity 60 14400 < th dose independent rect. 17 1
299 466.44 temperature 25 1440 > th dose dependent rect. 7 13
307 466.52 radiation 10 14400 > th dose independent rect. 5 1
345 466.83 temperature 30 90 < th dose dependent rect. 5 22
354 466.97 temperature 30 90 < th dose dependent rect. 9 18
394 467.61 radiation 30 4320 < th dose independent rect. 6 2
406 467.82 humidity 70 720 < th dose dependent rect. 17 2
424 468.09 humidity 60 14400 < th dose independent rect. 17 3
446 468.23 wind 9 43200 > th dose dependent rect. 13 19
461 468.35 temperature 20 10 > th dose dependent rect. 16 19
472 468.50 humidity 70 720 < th dose dependent rect. 17 14
524 469.08 temperature 10 30 > th dose dependent rect. 3 23
539 469.26 temperature 10 270 > th dose dependent rect. 24 9
546 469.33 humidity 50 270 > th dose dependent rect. 9 15
553 469.46 humidity 60 14400 > th dose independent rect. 17 11
569 469.60 humidity 60 14400 > th dose independent rect. 17 8
578 469.63 humidity 60 14400 > th dose independent rect. 17 3
614 469.85 temperature 25 1440 > th dose dependent no NA NA
636 470.12 temperature 10 720 > th dose dependent rect. 6 23
648 470.31 temperature 10 720 > th dose dependent rect. 16 23
653 470.41 humidity 60 4320 < th dose dependent rect. 17 1
672 470.59 humidity 60 4320 < th dose dependent rect. 17 3
685 470.60 temperature 30 90 < th dose dependent rect. 11 16
706 470.96 wind 3 43200 > th dose dependent rect. 19 22
729 471.28 humidity 80 43200 > th dose independent rect. 22 1
745 471.46 wind 7 43200 > th dose dependent rect. 17 23
756 471.64 wind 3 43200 > th dose dependent rect. 23 18
757 471.66 wind 9 43200 < th dose independent rect. 13 21
759 471.69 wind 9 43200 > th dose independent rect. 17 23
764 471.71 wind 9 43200 < th dose independent rect. 17 21
767 471.74 wind 7 43200 > th dose dependent rect. 19 21
778 471.83 wind 9 43200 > th dose independent rect. 13 20
784 471.86 temperature 30 720 > th dose independent rect. 17 16
789 471.93 wind 3 43200 > th dose dependent rect. 20 1
803 472.05 wind 9 43200 < th dose independent rect. 17 23
806 472.07 wind 9 43200 > th dose independent rect. 17 21
807 472.07 wind 7 43200 > th dose dependent rect. 2 23
809 472.08 temperature 30 720 > th dose dependent rect. 17 17
811 472.08 wind 7 43200 > th dose dependent rect. 23 23
815 472.10 wind 7 43200 > th dose dependent rect. 6 19
821 472.13 wind 9 43200 > th dose dependent sin 14 NA
826 472.16 wind 7 43200 > th dose dependent rect. 6 22
852 472.24 temperature 10 720 > th dose dependent rect. 3 23
856 472.26 wind 9 43200 < th dose dependent rect. 20 1
859 472.28 wind 3 43200 > th dose dependent rect. 13 23
867 472.32 wind 7 43200 > th dose dependent no NA NA
902 472.38 wind 7 43200 > th dose dependent rect. 15 23
903 472.39 wind 3 43200 > th dose dependent no NA NA
915 472.43 wind 7 43200 > th dose dependent rect. 6 16
926 472.45 wind 3 43200 > th dose dependent rect. 15 23
937 472.49 wind 3 43200 > th dose dependent rect. 23 23
943 472.50 wind 3 43200 > th dose dependent rect. 10 23
952 472.52 wind 3 43200 > th dose dependent rect. 1 23
962 472.58 temperature 10 1440 > th dose dependent rect. 7 11
969 472.61 radiation 1 270 < th dose independent rect. 5 22
998 472.77 humidity 50 270 > th dose independent rect. 9 15