BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0577200 Os12g0577200|AK106267
         (351 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os12g0577200  Conserved hypothetical protein                      428   e-120

>Os12g0577200 Conserved hypothetical protein
          Length = 351

 Score =  428 bits (1100), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 233/351 (66%), Positives = 233/351 (66%)

Query: 1   MRRGGFHGXXXXXXXXXXXXXXXXXXXXXXFFHGYHCYTSVAGLLVLPFSAAVXXXXXXX 60
           MRRGGFHG                      FFHGYHCYTSVAGLLVLPFSAAV       
Sbjct: 1   MRRGGFHGAAAASPTTVARAGRVMRAAVAAFFHGYHCYTSVAGLLVLPFSAAVLASGAMA 60

Query: 61  XXXXXXXXXVSARIRRMFDAAGFPPSSFFALFNAKLSQXXXXXXXXXXXXXXXXXXXKAC 120
                    VSARIRRMFDAAGFPPSSFFALFNAKLSQ                   KAC
Sbjct: 61  SPSSGALAAVSARIRRMFDAAGFPPSSFFALFNAKLSQTVFTFAAALPFTLTFLLLAKAC 120

Query: 121 VAAMLRPDDDGEXXXXXXXXXXXXTRLPPCGSVAGAYPAMVATHLFGAFVMLSANAAVFS 180
           VAAMLRPDDDGE            TRLPPCGSVAGAYPAMVATHLFGAFVMLSANAAVFS
Sbjct: 121 VAAMLRPDDDGEGVARRGRGVARATRLPPCGSVAGAYPAMVATHLFGAFVMLSANAAVFS 180

Query: 181 LMFLAFNGADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVVCNLAVVVSAMERRAGH 240
           LMFLAFNGAD                               TVVCNLAVVVSAMERRAGH
Sbjct: 181 LMFLAFNGADLLGLTTTSHAAATLALSAAGAIAYSVAVGIATVVCNLAVVVSAMERRAGH 240

Query: 241 AAVLRACVVIRGRVPTXXXXXXPTNLGMAAAEALFQLRVVSQAQRHRLAGAGDGKRLAAG 300
           AAVLRACVVIRGRVPT      PTNLGMAAAEALFQLRVVSQAQRHRLAGAGDGKRLAAG
Sbjct: 241 AAVLRACVVIRGRVPTALALALPTNLGMAAAEALFQLRVVSQAQRHRLAGAGDGKRLAAG 300

Query: 301 VAGEAFSIAYIHALCVVLEIIVSCMFYRSCRRSXXXXXXXXXXXXKGDLQA 351
           VAGEAFSIAYIHALCVVLEIIVSCMFYRSCRRS            KGDLQA
Sbjct: 301 VAGEAFSIAYIHALCVVLEIIVSCMFYRSCRRSEADELRELEPEEKGDLQA 351



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.330    0.138    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,478,395
Number of extensions: 196885
Number of successful extensions: 588
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 582
Number of HSP's successfully gapped: 2
Length of query: 351
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 249
Effective length of database: 11,709,973
Effective search space: 2915783277
Effective search space used: 2915783277
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 156 (64.7 bits)