BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0577200 Os12g0577200|AK106267
         (351 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G61340.1  | chr5:24662064-24663044 REVERSE LENGTH=327          103   2e-22
AT1G26650.1  | chr1:9210335-9211342 FORWARD LENGTH=336             51   1e-06
AT1G69430.1  | chr1:26098025-26099077 FORWARD LENGTH=351           49   4e-06

>AT5G61340.1 | chr5:24662064-24663044 REVERSE LENGTH=327
          Length = 326

 Score =  103 bits (256), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 86/304 (28%), Positives = 127/304 (41%), Gaps = 35/304 (11%)

Query: 31  FFHGYHCYTSVAGLLVLPFSAAVXXXXXXXXXXXXXXXXVSARIRRMFDAAGFPPS-SFF 89
           F   YH  T+ A +  LPFSA +                +  R+  +F  AGF  S  FF
Sbjct: 19  FLQNYHRVTTAAAV-ALPFSAGLLLSQPFFSSSSST---LHMRLNMLFRGAGFSSSHDFF 74

Query: 90  ALFNAKLSQXXXXXXXXXXXXXXXXXXXKACVAAMLRPDDDGEXXXXXXXXXXXXTRLPP 149
            + + KLSQ                   KA V  +L  +   +                 
Sbjct: 75  NILSLKLSQTLSSSLFTLPFSLTFLLLSKAYVIKLLSNNHSAD----------------- 117

Query: 150 CGSVAGAYPAMVATHLFGAFVMLSANAAVFSLMFLAFNGADXXXXXXXXXXXXXXXXXXX 209
             S +  Y  ++ T++   F +LSANA+ F+L FLA+N  +                   
Sbjct: 118 --SSSVFYLRLLKTYVCNFFFLLSANASAFALFFLAYNTLEAFGFSSRNFYTFLSLSSAI 175

Query: 210 XXXXXXXXXXXXTVVCNLAVVVSAMERRAGHAAVLRACVVIRGRVPTXXXXXXPTNLGMA 269
                        V+ NLA+V S      G+  +L+AC++IRGR  T      PTNLG+A
Sbjct: 176 IYSIIIANAF---VISNLALVSSPSSSSGGYTNILKACLLIRGRNSTAMALALPTNLGLA 232

Query: 270 AAEALFQLRVVSQAQRHRLAGAGDGKRLAAGVAGEAFSIAYIHALCVVLEIIVSCMFYRS 329
             EALFQ RV        +    +G R    +A E   IAY++AL +VL+ IV+ +FY+S
Sbjct: 233 GVEALFQYRV--------MRSYYNGDRDIISIALEGTFIAYLYALFLVLDTIVNFLFYQS 284

Query: 330 CRRS 333
           C ++
Sbjct: 285 CIKN 288



>AT1G26650.1 | chr1:9210335-9211342 FORWARD LENGTH=336
          Length = 335

 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 57/110 (51%), Gaps = 13/110 (11%)

Query: 223 VVCNLAVVVSAMERRAGHAAVLRACVVIRGRVPTXXXXXXPTNLGMAAAEALFQLRVVSQ 282
           ++CN A+V+S +E  +G  A++RA  +I+G++         + LG+A  E LF  RV   
Sbjct: 213 IICNTAIVISVLEDVSGLGALMRASDLIKGQIQVGLLMFLGSTLGLAFVEGLFDHRV--- 269

Query: 283 AQRHRLAGAGDG-KRLAAGVAGEAFSIAYIHALCVVLEIIVSCMFYRSCR 331
               +    GDG  RL  G       +  +++   +++ ++S +FY SCR
Sbjct: 270 ----KKVSYGDGSSRLWEGPL-----LVLMYSFVTLIDSMMSAVFYFSCR 310



>AT1G69430.1 | chr1:26098025-26099077 FORWARD LENGTH=351
          Length = 350

 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 57/110 (51%), Gaps = 13/110 (11%)

Query: 223 VVCNLAVVVSAMERRAGHAAVLRACVVIRGRVPTXXXXXXPTNLGMAAAEALFQLRVVSQ 282
           ++CN  +V+S +E  +G  A++RA  +I+G+          + +G+   E LF+ RV S 
Sbjct: 229 IICNTTIVISILEDVSGPGALVRASDLIKGQTQVGLLIFLGSTIGLTFVEGLFEHRVKSL 288

Query: 283 AQRHRLAGAGDG-KRLAAGVAGEAFSIAYIHALCVVLEIIVSCMFYRSCR 331
           +        GDG  RL  G       +  +++  V+++ ++S +FY SCR
Sbjct: 289 SY-------GDGSSRLWEGPL-----LVVMYSFVVLIDTMMSAVFYFSCR 326



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.330    0.138    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,337,687
Number of extensions: 101561
Number of successful extensions: 184
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 181
Number of HSP's successfully gapped: 3
Length of query: 351
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 251
Effective length of database: 8,364,969
Effective search space: 2099607219
Effective search space used: 2099607219
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 112 (47.8 bits)