Os12g0577100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
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Os12g0577100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.22 | 0.226 | 2.95 | -0.0537 | 0.0921 | 0.194 | -0.05 | -0.844 | -0.0487 | 10.3 | 78 | 4120 | -- | -- |
| 23.8 | 0.227 | 2.95 | 0.0255 | 0.0868 | 0.161 | -0.02 | -- | -0.0244 | 10 | 79.96 | 4385 | -- | -- |
| 23.23 | 0.224 | 2.95 | -0.0545 | 0.0923 | 0.194 | -- | -0.833 | -0.0488 | 10.3 | 78.09 | 4121 | -- | -- |
| 23.8 | 0.227 | 2.95 | 0.0245 | 0.0865 | 0.154 | -- | -- | -0.0225 | 10.3 | 79.67 | 4381 | -- | -- |
| 23.7 | 0.227 | 2.95 | -0.0583 | -- | 0.201 | -- | -0.775 | -0.0576 | -- | 78 | 4320 | -- | -- |
| 24.06 | 0.23 | 2.94 | 0.0195 | 0.0896 | -- | -0.0176 | -- | 0.0337 | 10.6 | -- | -- | -- | -- |
| 24.06 | 0.23 | 2.94 | 0.0188 | 0.0897 | -- | -- | -- | 0.0337 | 10.6 | -- | -- | -- | -- |
| 24.25 | 0.229 | 2.96 | 0.0245 | -- | 0.165 | -- | -- | -0.0267 | -- | 79.71 | 4399 | -- | -- |
| 23.81 | 0.227 | 2.95 | -- | 0.0862 | 0.151 | -- | -- | -0.0237 | 10.2 | 79.16 | 4381 | -- | -- |
| 24.55 | 0.232 | 2.94 | 0.0172 | -- | -- | -- | -- | 0.0332 | -- | -- | -- | -- | -- |
| 24.07 | 0.229 | 2.94 | -- | 0.0896 | -- | -- | -- | 0.0316 | 10.6 | -- | -- | -- | -- |
| 24.26 | 0.229 | 2.96 | -- | -- | 0.163 | -- | -- | -0.0268 | -- | 78.67 | 4398 | -- | -- |
| 24.56 | 0.231 | 2.94 | -- | -- | -- | -- | -- | 0.0313 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.47 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 2 | 21.61 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 21 | 6 |
| 12 | 21.72 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 22 | 21.83 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 14 | 1 |
| 23 | 21.85 | atmosphere | 1010.0 | 10 | > th | dose dependent | rect. | 12 | 1 |
| 132 | 21.97 | atmosphere | 1010.0 | 30 | > th | dose dependent | sin | 23 | NA |
| 392 | 22.04 | humidity | 70.0 | 4320 | < th | dose independent | rect. | 20 | 11 |
| 394 | 22.06 | humidity | 70.0 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 406 | 22.06 | humidity | 70.0 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 557 | 22.16 | wind | 9.0 | 4320 | > th | dose independent | rect. | 14 | 1 |
| 570 | 22.23 | radiation | 1.0 | 270 | < th | dose independent | rect. | 8 | 1 |
| 571 | 22.23 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 8 | 1 |
| 694 | 22.40 | wind | 9.0 | 4320 | < th | dose independent | rect. | 14 | 1 |
| 702 | 22.41 | humidity | 80.0 | 4320 | < th | dose dependent | rect. | 19 | 14 |
| 722 | 22.45 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 725 | 22.46 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 728 | 22.46 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 732 | 22.46 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 738 | 22.46 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 739 | 22.46 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 759 | 22.46 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 22 | 23 |
| 765 | 22.47 | temperature | 25.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 772 | 22.48 | wind | 3.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 783 | 22.49 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 20 | 1 |
| 785 | 22.49 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 20 | 1 |
| 788 | 22.50 | humidity | 80.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 789 | 22.50 | humidity | 90.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 796 | 22.51 | wind | 9.0 | 30 | < th | dose independent | rect. | 21 | 23 |
| 797 | 22.51 | wind | 1.0 | 30 | > th | dose dependent | rect. | 20 | 1 |
| 801 | 22.52 | wind | 5.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 803 | 22.52 | wind | 9.0 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 805 | 22.52 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 811 | 22.53 | temperature | 10.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 813 | 22.53 | temperature | 30.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 814 | 22.53 | humidity | 50.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 817 | 22.53 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 819 | 22.53 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 821 | 22.53 | radiation | 1.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 826 | 22.53 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 20 | 1 |
| 827 | 22.53 | temperature | 10.0 | 30 | > th | dose independent | rect. | 21 | 23 |
| 829 | 22.53 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 20 | 1 |
| 831 | 22.53 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 838 | 22.53 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 842 | 22.54 | wind | 9.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 867 | 22.58 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 868 | 22.58 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 876 | 22.60 | atmosphere | 1010.0 | 10 | > th | dose independent | rect. | 11 | 1 |
| 997 | 22.64 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 9 | 10 |