BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0577100 Os12g0577100|AK059444
(414 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G52660.1 | chr3:19522598-19524735 FORWARD LENGTH=472 52 6e-07
AT4G00830.1 | chr4:352782-354965 FORWARD LENGTH=496 52 8e-07
AT5G28390.1 | chr5:10342024-10342997 REVERSE LENGTH=181 52 8e-07
AT5G19960.1 | chr5:6744029-6746133 FORWARD LENGTH=338 50 2e-06
>AT3G52660.1 | chr3:19522598-19524735 FORWARD LENGTH=472
Length = 471
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 47/74 (63%), Gaps = 9/74 (12%)
Query: 3 KVKTAFVGNLPANVTEEYLRKLFEHCGEVVRVAV--SRKGQYP--VGFVHFASRTELDNA 58
+VK ++ NLP ++T+E L+ LFEH G++++V + ++ G+ GFVH+A RT + A
Sbjct: 266 QVKALYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYAERTSVMRA 325
Query: 59 IK-----EMDGETV 67
+K E+DG +
Sbjct: 326 LKNTERYEIDGHML 339
>AT4G00830.1 | chr4:352782-354965 FORWARD LENGTH=496
Length = 495
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 8/89 (8%)
Query: 2 AKVKTAFVGNLPANVTEEYLRKLFEHCGEVVRVAV--SRKGQYPVGFVHFASRTELDNAI 59
A+VK +V N+P N + E L++LF+ GEV ++ + G+ GFVH+A R+ A+
Sbjct: 289 AQVKALYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGKGGKRDFGFVHYAERSSALKAV 348
Query: 60 KEMDGETVRGPDRGATFRIQVSVARPVVE 88
K+ + V G ++V +A+P E
Sbjct: 349 KDTERYEVNGQ------PLEVVLAKPQAE 371
>AT5G28390.1 | chr5:10342024-10342997 REVERSE LENGTH=181
Length = 180
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 43/63 (68%), Gaps = 4/63 (6%)
Query: 2 AKVKTAFVGNLPANVTEEYLRKLFEHCGEVVRVAV--SRKGQYP--VGFVHFASRTELDN 57
++VK ++ NLP ++T+E L+ LFEH G++++V + ++ G+ GFVH+A RT +
Sbjct: 31 SQVKALYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYAERTSVMR 90
Query: 58 AIK 60
A+K
Sbjct: 91 ALK 93
>AT5G19960.1 | chr5:6744029-6746133 FORWARD LENGTH=338
Length = 337
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 46/73 (63%), Gaps = 5/73 (6%)
Query: 1 MAKVKTAFVGNLPANVTEEYLRKLFEHCGEVVRVAV----SRKGQYPVGFVHFASRTELD 56
M + +VG LP ++TEE +R++F G V+ V + S +G+ GFV F++R D
Sbjct: 3 MDDGNSVYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGK-CYGFVTFSNRRSAD 61
Query: 57 NAIKEMDGETVRG 69
+AI++MDG+++ G
Sbjct: 62 DAIEDMDGKSIGG 74
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.314 0.131 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,918,418
Number of extensions: 376038
Number of successful extensions: 1043
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1075
Number of HSP's successfully gapped: 4
Length of query: 414
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 313
Effective length of database: 8,337,553
Effective search space: 2609654089
Effective search space used: 2609654089
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 113 (48.1 bits)