BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0577100 Os12g0577100|AK059444
         (414 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os12g0577100  RNA-binding region RNP-1 (RNA recognition moti...   818   0.0  

>Os12g0577100 RNA-binding region RNP-1 (RNA recognition motif) domain containing
           protein
          Length = 414

 Score =  818 bits (2114), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/414 (97%), Positives = 404/414 (97%)

Query: 1   MAKVKTAFVGNLPANVTEEYLRKLFEHCGEVVRVAVSRKGQYPVGFVHFASRTELDNAIK 60
           MAKVKTAFVGNLPANVTEEYLRKLFEHCGEVVRVAVSRKGQYPVGFVHFASRTELDNAIK
Sbjct: 1   MAKVKTAFVGNLPANVTEEYLRKLFEHCGEVVRVAVSRKGQYPVGFVHFASRTELDNAIK 60

Query: 61  EMDGETVRGPDRGATFRIQVSVARPVVENDKKRIREEVKTRRSNVSTDKPDHSYGRRGHD 120
           EMDGETVRGPDRGATFRIQVSVARPVVENDKKRIREEVKTRRSNVSTDKPDHSYGRRGHD
Sbjct: 61  EMDGETVRGPDRGATFRIQVSVARPVVENDKKRIREEVKTRRSNVSTDKPDHSYGRRGHD 120

Query: 121 SYDRQAKAPRLYNEVSDTDPYEAAVVSLPSAVKEXXXXXXXXXXGTRYDIDIHCIRSLNE 180
           SYDRQAKAPRLYNEVSDTDPYEAAVVSLPSAVKE          GTRYDIDIHCIRSLNE
Sbjct: 121 SYDRQAKAPRLYNEVSDTDPYEAAVVSLPSAVKELLLRILRLRIGTRYDIDIHCIRSLNE 180

Query: 181 LPEKAAVAVLNQFLISGADKHNKGDYFASLIAKYQAETFSSALRLQGSTYLPRNPEIQNK 240
           LPEKAAVAVLNQFLISGADKHNKGDYFASLIAKYQAETFSSALRLQGSTYLPRNPEIQNK
Sbjct: 181 LPEKAAVAVLNQFLISGADKHNKGDYFASLIAKYQAETFSSALRLQGSTYLPRNPEIQNK 240

Query: 241 RFPHQDYEYTASGSSRYSSLGDYPSSSYVDDPASSQSRNRRYDEYRPDLVRYPDSRSRQE 300
           RFPHQDYEYTASGSSRYSSLGDYPSSSYVDDPASSQSRNRRYDEYRPDLVRYPDSRSRQE
Sbjct: 241 RFPHQDYEYTASGSSRYSSLGDYPSSSYVDDPASSQSRNRRYDEYRPDLVRYPDSRSRQE 300

Query: 301 EIVRIERYPEPRFAHEPRQDTGRHLDLGYVQERNSNIERSAQVAFSSREGGYLSASRYNT 360
           EIVRIERYPEPRFAHEPRQDTGRHLDLGYVQERNSNIERSAQVAFSSREGGYLSASRYNT
Sbjct: 301 EIVRIERYPEPRFAHEPRQDTGRHLDLGYVQERNSNIERSAQVAFSSREGGYLSASRYNT 360

Query: 361 NIVPEFSSRSSAEYSTARQQVRFDPFTGEPYKFDPYTGEPIRPESNPRRSGSLY 414
           NIVPEFSSRSSAEYSTARQQVRFDPFTGEPYKFDPYTGEPIRPESNPRRSGSLY
Sbjct: 361 NIVPEFSSRSSAEYSTARQQVRFDPFTGEPYKFDPYTGEPIRPESNPRRSGSLY 414



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.314    0.131    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,803,986
Number of extensions: 580991
Number of successful extensions: 1320
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1327
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 311
Effective length of database: 11,657,759
Effective search space: 3625563049
Effective search space used: 3625563049
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 157 (65.1 bits)