Os12g0575000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF1118 family protein.
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Os12g0575000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF1118 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20.5 | 0.213 | 14.7 | -0.799 | 0.476 | 0.437 | -0.0405 | 0.79 | -0.19 | 7.09 | 20.9 | 919 | -- | -- |
| 22.11 | 0.219 | 14.8 | -0.919 | 0.45 | 0.29 | -0.0513 | -- | -0.215 | 7.02 | 22.07 | 974 | -- | -- |
| 20.5 | 0.211 | 14.7 | -0.798 | 0.476 | 0.438 | -- | 0.798 | -0.19 | 7.08 | 20.89 | 919 | -- | -- |
| 22.05 | 0.219 | 14.8 | -0.956 | 0.452 | 0.32 | -- | -- | -0.239 | 7.01 | 22 | 1118 | -- | -- |
| 30.81 | 0.259 | 14.7 | -0.729 | -- | 0.444 | -- | 0.852 | -0.185 | -- | 21.44 | 1366 | -- | -- |
| 26 | 0.239 | 14.7 | -0.822 | 0.443 | -- | -0.199 | -- | -0.139 | 6.74 | -- | -- | -- | -- |
| 26.09 | 0.239 | 14.7 | -0.826 | 0.443 | -- | -- | -- | -0.138 | 6.65 | -- | -- | -- | -- |
| 32.09 | 0.264 | 14.8 | -0.941 | -- | 0.285 | -- | -- | -0.252 | -- | 23.1 | 1369 | -- | -- |
| 43.46 | 0.307 | 14.7 | -- | 0.433 | 0.113 | -- | -- | -0.086 | 6.97 | 22.9 | 1111 | -- | -- |
| 36.31 | 0.282 | 14.8 | -0.815 | -- | -- | -- | -- | -0.129 | -- | -- | -- | -- | -- |
| 44.07 | 0.311 | 14.7 | -- | 0.432 | -- | -- | -- | -0.0462 | 6.76 | -- | -- | -- | -- |
| 53.15 | 0.34 | 14.7 | -- | -- | 0.143 | -- | -- | -0.0835 | -- | 25.05 | 1322 | -- | -- |
| 53.84 | 0.343 | 14.7 | -- | -- | -- | -- | -- | -0.0388 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.60 | atmosphere | 995 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 4 | 20.60 | atmosphere | 995 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 7 | 20.64 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 22 | 20.72 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 14 |
| 24 | 20.73 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 35 | 20.81 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 36 | 20.81 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 7 |
| 37 | 20.82 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 6 |
| 39 | 20.82 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 10 |
| 44 | 20.85 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 11 |
| 45 | 20.86 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 2 |
| 91 | 20.97 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 6 |
| 98 | 20.99 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 9 |
| 110 | 21.02 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 112 | 21.02 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 9 |
| 123 | 21.04 | wind | 5 | 4320 | > th | dose dependent | rect. | 20 | 5 |
| 127 | 21.05 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 134 | 21.06 | wind | 5 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 137 | 21.06 | atmosphere | 1005 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 148 | 21.08 | wind | 5 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 149 | 21.08 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 4 |
| 153 | 21.08 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 20 |
| 160 | 21.11 | wind | 7 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 161 | 21.11 | wind | 7 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 162 | 21.11 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 164 | 21.11 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 20 |
| 180 | 21.15 | temperature | 20 | 1440 | > th | dose dependent | sin | 12 | NA |
| 181 | 21.15 | wind | 5 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 182 | 21.15 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 186 | 21.15 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 198 | 21.17 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 4 |
| 203 | 21.17 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 7 |
| 207 | 21.18 | temperature | 25 | 4320 | < th | dose independent | rect. | 20 | 10 |
| 221 | 21.19 | radiation | 1 | 43200 | < th | dose dependent | rect. | 24 | 1 |
| 228 | 21.19 | temperature | 15 | 720 | > th | dose dependent | rect. | 16 | 17 |
| 236 | 21.20 | temperature | 25 | 4320 | > th | dose independent | rect. | 20 | 10 |
| 238 | 21.20 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 21 |
| 241 | 21.20 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 254 | 21.21 | temperature | 25 | 4320 | > th | dose independent | rect. | 20 | 8 |
| 259 | 21.21 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 279 | 21.22 | temperature | 25 | 4320 | > th | dose independent | rect. | 22 | 8 |
| 280 | 21.22 | wind | 9 | 43200 | > th | dose independent | rect. | 17 | 15 |
| 299 | 21.24 | wind | 7 | 4320 | < th | dose independent | rect. | 20 | 5 |
| 331 | 21.25 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 9 |
| 336 | 21.26 | temperature | 25 | 4320 | > th | dose independent | rect. | 22 | 4 |
| 349 | 21.26 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 12 |
| 403 | 21.28 | temperature | 25 | 720 | < th | dose dependent | rect. | 10 | 21 |
| 422 | 21.30 | wind | 1 | 4320 | < th | dose independent | rect. | 10 | 1 |
| 430 | 21.30 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 4 |
| 450 | 21.31 | temperature | 25 | 4320 | < th | dose independent | rect. | 1 | 6 |
| 494 | 21.32 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 496 | 21.32 | wind | 7 | 4320 | > th | dose independent | rect. | 20 | 5 |
| 517 | 21.33 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 20 |
| 519 | 21.33 | wind | 1 | 4320 | < th | dose dependent | rect. | 10 | 1 |
| 535 | 21.34 | temperature | 25 | 4320 | < th | dose independent | rect. | 22 | 4 |
| 579 | 21.36 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 22 | 1 |
| 586 | 21.36 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 588 | 21.36 | radiation | 1 | 43200 | < th | dose dependent | rect. | 24 | 3 |
| 605 | 21.36 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 19 |
| 613 | 21.37 | temperature | 20 | 720 | > th | dose independent | rect. | 13 | 18 |
| 635 | 21.37 | temperature | 25 | 720 | < th | dose dependent | rect. | 15 | 23 |
| 636 | 21.38 | temperature | 25 | 4320 | > th | dose independent | rect. | 23 | 1 |
| 640 | 21.38 | atmosphere | 1005 | 43200 | < th | dose dependent | sin | 23 | NA |
| 668 | 21.38 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 21 |
| 702 | 21.39 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 23 |
| 704 | 21.40 | temperature | 25 | 4320 | < th | dose independent | rect. | 23 | 2 |
| 812 | 21.42 | temperature | 25 | 10 | < th | dose dependent | rect. | 24 | 22 |
| 844 | 21.44 | temperature | 25 | 4320 | < th | dose independent | rect. | 5 | 1 |
| 855 | 21.44 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 1 |
| 877 | 21.44 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 23 |
| 884 | 21.45 | temperature | 30 | 1440 | < th | dose dependent | sin | 13 | NA |
| 925 | 21.46 | temperature | 20 | 720 | > th | dose independent | rect. | 10 | 21 |
| 967 | 21.47 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 4 |
| 989 | 21.47 | temperature | 25 | 90 | < th | dose dependent | rect. | 1 | 22 |