BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0575000 Os12g0575000|AK104945
         (190 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os12g0575000  Protein of unknown function DUF1118 family pro...   254   4e-68
Os11g0460900                                                       81   6e-16

>Os12g0575000 Protein of unknown function DUF1118 family protein
          Length = 190

 Score =  254 bits (648), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 139/178 (78%), Positives = 139/178 (78%)

Query: 1   MVMDAARAVAMPSLSPATVAARPSSRRLHKVAAMATQKPTSGTRRGTTVYFPVGEPGPRQ 60
           MVMDAARAVAMPSLSPATVAARPSSRRLHKVAAMATQKPTSGTRRGTTVYFPVGEPGPRQ
Sbjct: 1   MVMDAARAVAMPSLSPATVAARPSSRRLHKVAAMATQKPTSGTRRGTTVYFPVGEPGPRQ 60

Query: 61  TTSGKAAAPPVKLLTNVEKLRLLTKAEKAGLLSAAERAGLSLSAVERLGLLSKAEELEVL 120
           TTSGKAAAPPVKLLTNVEKLRLLTKAEKAGLLSAAERAGLSLSAVERLGLLSKAEELEVL
Sbjct: 61  TTSGKAAAPPVKLLTNVEKLRLLTKAEKAGLLSAAERAGLSLSAVERLGLLSKAEELEVL 120

Query: 121 SAATDXXXXXXXXXXXXXXXXXXXXXXXXXXEEYPWEXXXXXXXXXXXXXGGSTAFAA 178
           SAATD                          EEYPWE             GGSTAFAA
Sbjct: 121 SAATDPGTPGALLGVALLLLAAGPAVVYLVPEEYPWEVAVQAVVALACVVGGSTAFAA 178



>Os11g0460900 
          Length = 126

 Score = 80.9 bits (198), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 54/102 (52%), Positives = 54/102 (52%)

Query: 76  NVEKLRLLTKAEKAGLLSAAERAGLSLSAVERLGLLSKAEELEVLSAATDXXXXXXXXXX 135
           NVEKLRLLTKA    LLSAAERAGLSLSAVE LGLL KAEELEVLSAATD          
Sbjct: 2   NVEKLRLLTKAGTTVLLSAAERAGLSLSAVEWLGLLYKAEELEVLSAATDHGTPGALLGV 61

Query: 136 XXXXXXXXXXXXXXXXEEYPWEXXXXXXXXXXXXXGGSTAFA 177
                           EEYP E             GGS  FA
Sbjct: 62  ALLLLAAGPAVVYLVTEEYPREVAVQAVVALACVVGGSATFA 103



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.310    0.123    0.335 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,289,319
Number of extensions: 156015
Number of successful extensions: 686
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 680
Number of HSP's successfully gapped: 2
Length of query: 190
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 95
Effective length of database: 12,075,471
Effective search space: 1147169745
Effective search space used: 1147169745
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 153 (63.5 bits)