Os12g0571900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Suppressor of forked domain containing protein.
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Os12g0571900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Suppressor of forked domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 14.16 | 0.177 | 10.9 | -0.823 | 0.235 | -0.257 | 0.199 | 0.152 | -0.0313 | 5.9 | 60.03 | 51 | -- | -- |
| 14.21 | 0.176 | 10.9 | -0.824 | 0.231 | -0.246 | 0.178 | -- | -0.0331 | 5.86 | 61.36 | 53 | -- | -- |
| 14.26 | 0.176 | 10.9 | -0.821 | 0.233 | -0.263 | -- | 0.131 | -0.0334 | 5.91 | 60 | 50 | -- | -- |
| 14.23 | 0.176 | 10.9 | -0.811 | 0.213 | -0.26 | -- | -- | -0.0337 | 5.98 | 64 | 110 | -- | -- |
| 15.76 | 0.185 | 10.9 | -0.789 | -- | -0.35 | -- | -0.0657 | -0.00402 | -- | 67.17 | 334 | -- | -- |
| 16.14 | 0.188 | 10.9 | -0.829 | 0.288 | -- | 0.275 | -- | -0.000686 | 5.28 | -- | -- | -- | -- |
| 16.33 | 0.189 | 10.9 | -0.829 | 0.29 | -- | -- | -- | -0.00198 | 5.23 | -- | -- | -- | -- |
| 15.74 | 0.185 | 10.9 | -0.784 | -- | -0.371 | -- | -- | -0.0132 | -- | 66.84 | 319 | -- | -- |
| 31.44 | 0.261 | 10.9 | -- | 0.164 | -0.35 | -- | -- | 0.0482 | 5.83 | 62.68 | 258 | -- | -- |
| 20.72 | 0.213 | 10.9 | -0.819 | -- | -- | -- | -- | 0.00529 | -- | -- | -- | -- | -- |
| 34.43 | 0.274 | 10.9 | -- | 0.276 | -- | -- | -- | 0.0903 | 5.35 | -- | -- | -- | -- |
| 31.84 | 0.263 | 10.9 | -- | -- | -0.422 | -- | -- | 0.0704 | -- | 67 | 319 | -- | -- |
| 38.4 | 0.289 | 10.9 | -- | -- | -- | -- | -- | 0.0961 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 13.90 | humidity | 60 | 270 | < th | dose independent | rect. | 11 | 3 |
| 2 | 13.97 | humidity | 60 | 30 | > th | dose independent | rect. | 3 | 23 |
| 4 | 13.98 | humidity | 60 | 30 | > th | dose independent | rect. | 4 | 18 |
| 8 | 14.03 | humidity | 60 | 90 | < th | dose independent | rect. | 11 | 6 |
| 12 | 14.06 | humidity | 60 | 270 | > th | dose independent | rect. | 1 | 21 |
| 14 | 14.10 | humidity | 60 | 30 | > th | dose independent | rect. | 8 | 14 |
| 17 | 14.12 | humidity | 60 | 270 | < th | dose independent | rect. | 18 | 21 |
| 18 | 14.12 | humidity | 70 | 90 | < th | dose dependent | rect. | 11 | 6 |
| 36 | 14.15 | humidity | 70 | 270 | < th | dose dependent | rect. | 11 | 3 |
| 37 | 14.16 | humidity | 60 | 30 | < th | dose independent | sin | 21 | NA |
| 39 | 14.16 | temperature | 30 | 90 | > th | dose independent | rect. | 10 | 7 |
| 75 | 14.17 | humidity | 60 | 30 | > th | dose independent | rect. | 23 | 23 |
| 78 | 14.18 | humidity | 60 | 30 | > th | dose independent | rect. | 1 | 23 |
| 87 | 14.22 | humidity | 60 | 30 | < th | dose independent | rect. | 13 | 23 |
| 89 | 14.23 | humidity | 60 | 30 | < th | dose independent | no | NA | NA |
| 191 | 14.23 | humidity | 60 | 30 | < th | dose independent | rect. | 11 | 23 |
| 197 | 14.23 | humidity | 70 | 270 | < th | dose dependent | rect. | 9 | 6 |
| 198 | 14.24 | humidity | 60 | 30 | > th | dose independent | sin | 21 | NA |
| 204 | 14.24 | humidity | 60 | 30 | < th | dose independent | rect. | 15 | 23 |
| 207 | 14.25 | radiation | 40 | 720 | > th | dose independent | rect. | 8 | 1 |
| 226 | 14.25 | humidity | 70 | 90 | < th | dose dependent | rect. | 19 | 22 |
| 231 | 14.26 | humidity | 60 | 30 | > th | dose independent | rect. | 16 | 23 |
| 232 | 14.26 | humidity | 80 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 234 | 14.27 | humidity | 60 | 30 | > th | dose independent | no | NA | NA |
| 240 | 14.27 | humidity | 60 | 30 | > th | dose independent | rect. | 10 | 12 |
| 264 | 14.28 | humidity | 70 | 90 | < th | dose dependent | rect. | 7 | 10 |
| 370 | 14.32 | humidity | 60 | 270 | < th | dose independent | sin | 3 | NA |
| 412 | 14.34 | temperature | 30 | 90 | > th | dose dependent | rect. | 10 | 7 |
| 536 | 14.36 | radiation | 20 | 720 | < th | dose independent | rect. | 17 | 16 |
| 539 | 14.36 | humidity | 70 | 90 | < th | dose dependent | sin | 22 | NA |
| 550 | 14.37 | humidity | 70 | 270 | < th | dose dependent | sin | 3 | NA |
| 603 | 14.40 | radiation | 20 | 720 | < th | dose independent | rect. | 1 | 8 |
| 750 | 14.42 | temperature | 30 | 90 | < th | dose independent | rect. | 4 | 18 |
| 759 | 14.42 | radiation | 20 | 720 | > th | dose dependent | rect. | 6 | 3 |
| 800 | 14.43 | temperature | 30 | 270 | < th | dose independent | rect. | 1 | 21 |
| 806 | 14.43 | humidity | 70 | 90 | < th | dose dependent | rect. | 11 | 9 |
| 876 | 14.45 | temperature | 30 | 90 | > th | dose dependent | sin | 1 | NA |
| 922 | 14.45 | temperature | 30 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 923 | 14.45 | humidity | 50 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 930 | 14.46 | humidity | 70 | 90 | < th | dose dependent | no | NA | NA |