BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0571900 Os12g0571900|AK102914
         (731 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os12g0571900  Suppressor of forked domain containing protein     1479   0.0  

>Os12g0571900 Suppressor of forked domain containing protein
          Length = 731

 Score = 1479 bits (3830), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 711/731 (97%), Positives = 711/731 (97%)

Query: 1   MDIYNVEAAEILANEAQLLPIGEAAPIYEKLLSTFPTAAKYWKQYVEAYMSAKDDEATKQ 60
           MDIYNVEAAEILANEAQLLPIGEAAPIYEKLLSTFPTAAKYWKQYVEAYMSAKDDEATKQ
Sbjct: 1   MDIYNVEAAEILANEAQLLPIGEAAPIYEKLLSTFPTAAKYWKQYVEAYMSAKDDEATKQ 60

Query: 61  IFSRCLLSCLQINLWRCYINFIRRVNDKRGSDGLEETKKAFDFMLNYVGNDVASGPVWMD 120
           IFSRCLLSCLQINLWRCYINFIRRVNDKRGSDGLEETKKAFDFMLNYVGNDVASGPVWMD
Sbjct: 61  IFSRCLLSCLQINLWRCYINFIRRVNDKRGSDGLEETKKAFDFMLNYVGNDVASGPVWMD 120

Query: 121 YIAFLKSMPVVTPQEESHRMTTVRKVYQKAILVPTNHVEQLWKDYENFENSVSRTLAKGL 180
           YIAFLKSMPVVTPQEESHRMTTVRKVYQKAILVPTNHVEQLWKDYENFENSVSRTLAKGL
Sbjct: 121 YIAFLKSMPVVTPQEESHRMTTVRKVYQKAILVPTNHVEQLWKDYENFENSVSRTLAKGL 180

Query: 181 LSEYQPKFNSAKAVYRERKKYIDDIDWNMLAVPPTGSYKEEQQCMAWKRLLAFEKGNPQR 240
           LSEYQPKFNSAKAVYRERKKYIDDIDWNMLAVPPTGSYKEEQQCMAWKRLLAFEKGNPQR
Sbjct: 181 LSEYQPKFNSAKAVYRERKKYIDDIDWNMLAVPPTGSYKEEQQCMAWKRLLAFEKGNPQR 240

Query: 241 IDATTANRRVTFTFEQCLMYLYHHPDIWYDYAMWHAKNGSVDSAIKIFQRAVKALPDSGV 300
           IDATTANRRVTFTFEQCLMYLYHHPDIWYDYAMWHAKNGSVDSAIKIFQRAVKALPDSGV
Sbjct: 241 IDATTANRRVTFTFEQCLMYLYHHPDIWYDYAMWHAKNGSVDSAIKIFQRAVKALPDSGV 300

Query: 301 LKYAFAELEESRGAIQPAKAIYESLIAENAGMTSLAHIQFIRFLRRTEGIEAARKYFLDA 360
           LKYAFAELEESRGAIQPAKAIYESLIAENAGMTSLAHIQFIRFLRRTEGIEAARKYFLDA
Sbjct: 301 LKYAFAELEESRGAIQPAKAIYESLIAENAGMTSLAHIQFIRFLRRTEGIEAARKYFLDA 360

Query: 361 RKLPGCTYHVYVAYATMAFCLDKDAKVAQSVFEAGLKRFMHEPGYILEYADFLCRLNDDR 420
           RKLPGCTYHVYVAYATMAFCLDKDAKVAQSVFEAGLKRFMHEPGYILEYADFLCRLNDDR
Sbjct: 361 RKLPGCTYHVYVAYATMAFCLDKDAKVAQSVFEAGLKRFMHEPGYILEYADFLCRLNDDR 420

Query: 421 NVRALFERALSLLPPEESIEVWKRFAQFEQTYGDLSSMLKVEQRRKEALSRTSEDALSAL 480
           NVRALFERALSLLPPEESIEVWKRFAQFEQTYGDLSSMLKVEQRRKEALSRTSEDALSAL
Sbjct: 421 NVRALFERALSLLPPEESIEVWKRFAQFEQTYGDLSSMLKVEQRRKEALSRTSEDALSAL 480

Query: 481 ENTLYDVVSRYSYMDLWPCSTKELDYLSRHEWLAKNIANRGDKSVVLTGGATLGDIRVGS 540
           ENTLYDVVSRYSYMDLWPCSTKELDYLSRHEWLAKNIANRGDKSVVLTGGATLGDIRVGS
Sbjct: 481 ENTLYDVVSRYSYMDLWPCSTKELDYLSRHEWLAKNIANRGDKSVVLTGGATLGDIRVGS 540

Query: 541 NKKSFPQSSKVVRPEISRMVIYDPRQMKGPDFSTTASGYTKEIDEILKRLSPQMMSFITN 600
           NKKSFPQSSKVVRPEISRMVIYDPRQMKGPDFSTTASGYTKEIDEILKRLSPQMMSFITN
Sbjct: 541 NKKSFPQSSKVVRPEISRMVIYDPRQMKGPDFSTTASGYTKEIDEILKRLSPQMMSFITN 600

Query: 601 LPAIEGPSPDMDIVLSVLMQSTLPVGDKPGSQVPGPATSDLSGPGKSGLNQNGSIHRPPR 660
           LPAIEGPSPDMDIVLSVLMQSTLPVGDKPGSQVPGPATSDLSGPGKSGLNQNGSIHRPPR
Sbjct: 601 LPAIEGPSPDMDIVLSVLMQSTLPVGDKPGSQVPGPATSDLSGPGKSGLNQNGSIHRPPR 660

Query: 661 DGQPTKRKNSERGRAQEEDDTSTTVQSRAMPRDIFRLRQIQRNRXXXXXXXXXXXXXXXX 720
           DGQPTKRKNSERGRAQEEDDTSTTVQSRAMPRDIFRLRQIQRNR                
Sbjct: 661 DGQPTKRKNSERGRAQEEDDTSTTVQSRAMPRDIFRLRQIQRNRGLGPSQSGSAALSSGS 720

Query: 721 XXXXDQSASSG 731
               DQSASSG
Sbjct: 721 VFSGDQSASSG 731



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.133    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 24,005,944
Number of extensions: 1012549
Number of successful extensions: 2822
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 2818
Number of HSP's successfully gapped: 1
Length of query: 731
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 623
Effective length of database: 11,396,689
Effective search space: 7100137247
Effective search space used: 7100137247
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 160 (66.2 bits)