Os12g0564600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF814 domain containing protein.
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Os12g0564600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF814 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18.87 | 0.204 | 11.7 | 0.614 | 0.35 | 0.455 | -0.123 | -0.757 | 0.528 | 21.5 | 92.01 | 463 | -- | -- |
| 19.55 | 0.206 | 11.7 | 0.591 | 0.356 | 0.473 | 0.101 | -- | 0.525 | 21.4 | 92 | 462 | -- | -- |
| 18.9 | 0.203 | 11.7 | 0.609 | 0.336 | 0.479 | -- | -0.753 | 0.523 | 21.4 | 92.56 | 402 | -- | -- |
| 19.57 | 0.206 | 11.7 | 0.571 | 0.361 | 0.468 | -- | -- | 0.52 | 21.4 | 92 | 462 | -- | -- |
| 24.47 | 0.232 | 11.7 | 0.586 | -- | 0.279 | -- | -0.67 | 0.492 | -- | 92.56 | 402 | -- | -- |
| 22.09 | 0.22 | 11.7 | 0.603 | 0.269 | -- | 0.0376 | -- | 0.454 | 22.6 | -- | -- | -- | -- |
| 22.09 | 0.22 | 11.7 | 0.601 | 0.268 | -- | -- | -- | 0.454 | 22.6 | -- | -- | -- | -- |
| 24.32 | 0.23 | 11.7 | 0.578 | -- | 0.218 | -- | -- | 0.497 | -- | 88.47 | 8 | -- | -- |
| 28.05 | 0.247 | 11.7 | -- | 0.384 | 0.532 | -- | -- | 0.47 | 21.3 | 91.67 | 462 | -- | -- |
| 26.52 | 0.241 | 11.7 | 0.606 | -- | -- | -- | -- | 0.456 | -- | -- | -- | -- | -- |
| 31.61 | 0.263 | 11.7 | -- | 0.273 | -- | -- | -- | 0.387 | 22.7 | -- | -- | -- | -- |
| 32.77 | 0.267 | 11.7 | -- | -- | 0.291 | -- | -- | 0.449 | -- | 88.92 | 6 | -- | -- |
| 36.21 | 0.281 | 11.7 | -- | -- | -- | -- | -- | 0.388 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.31 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 4 |
| 4 | 18.53 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 6 |
| 22 | 18.79 | humidity | 90 | 720 | > th | dose dependent | rect. | 9 | 17 |
| 26 | 18.82 | humidity | 90 | 720 | > th | dose independent | rect. | 20 | 6 |
| 42 | 18.87 | temperature | 25 | 30 | > th | dose independent | rect. | 1 | 8 |
| 55 | 18.87 | radiation | 20 | 1440 | < th | dose dependent | rect. | 12 | 3 |
| 56 | 18.88 | humidity | 90 | 720 | < th | dose independent | rect. | 20 | 4 |
| 58 | 18.88 | radiation | 10 | 1440 | < th | dose dependent | rect. | 10 | 7 |
| 65 | 18.93 | temperature | 25 | 30 | > th | dose independent | rect. | 3 | 6 |
| 67 | 18.93 | humidity | 90 | 720 | > th | dose dependent | sin | 16 | NA |
| 101 | 19.01 | humidity | 90 | 720 | < th | dose independent | rect. | 21 | 1 |
| 103 | 19.01 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 4 |
| 163 | 19.11 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 3 | 6 |
| 168 | 19.13 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 176 | 19.15 | humidity | 90 | 10 | < th | dose independent | rect. | 3 | 6 |
| 178 | 19.15 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 4 |
| 221 | 19.19 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 24 | 9 |
| 306 | 19.32 | atmosphere | 1005 | 270 | > th | dose dependent | rect. | 3 | 3 |
| 317 | 19.33 | radiation | 10 | 1440 | > th | dose independent | sin | 18 | NA |
| 337 | 19.36 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 7 |
| 356 | 19.37 | humidity | 70 | 1440 | < th | dose independent | rect. | 14 | 1 |
| 375 | 19.38 | radiation | 10 | 1440 | < th | dose dependent | sin | 18 | NA |
| 408 | 19.41 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 432 | 19.44 | humidity | 90 | 720 | > th | dose independent | rect. | 10 | 16 |
| 438 | 19.45 | humidity | 90 | 720 | > th | dose dependent | rect. | 1 | 1 |
| 462 | 19.47 | humidity | 90 | 10 | < th | dose independent | rect. | 23 | 10 |
| 470 | 19.48 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 473 | 19.48 | humidity | 90 | 10 | < th | dose independent | rect. | 13 | 20 |
| 510 | 19.53 | radiation | 20 | 1440 | < th | dose independent | rect. | 12 | 2 |
| 600 | 19.60 | humidity | 90 | 1440 | < th | dose dependent | rect. | 12 | 4 |
| 650 | 19.64 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 6 |
| 655 | 19.64 | humidity | 90 | 1440 | < th | dose dependent | rect. | 14 | 1 |
| 671 | 19.65 | temperature | 20 | 30 | > th | dose dependent | rect. | 4 | 5 |
| 674 | 19.66 | humidity | 90 | 720 | > th | dose independent | sin | 14 | NA |
| 734 | 19.68 | humidity | 90 | 720 | > th | dose dependent | rect. | 18 | 22 |
| 738 | 19.69 | temperature | 20 | 30 | > th | dose dependent | rect. | 6 | 3 |
| 825 | 19.73 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 4 |
| 832 | 19.73 | humidity | 90 | 720 | > th | dose dependent | no | NA | NA |
| 909 | 19.75 | humidity | 50 | 720 | > th | dose dependent | rect. | 14 | 14 |
| 976 | 19.79 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 11 |
| 978 | 19.79 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 13 |
| 979 | 19.79 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 16 |