BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0564600 Os12g0564600|AK101383
(1159 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G49930.1 | chr5:20308260-20312736 REVERSE LENGTH=1081 1355 0.0
>AT5G49930.1 | chr5:20308260-20312736 REVERSE LENGTH=1081
Length = 1080
Score = 1355 bits (3508), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 692/1150 (60%), Positives = 830/1150 (72%), Gaps = 96/1150 (8%)
Query: 1 MVKARMTTADVAAEVKCLRRLIGMRLSNVYGITPKTYLFKLMNSSGITESGESEKVLLLM 60
MVK RM TADVAAEVKCL+RLIGMR SNVY I+PKTY+FKL+NSSGITESGESEKVLLLM
Sbjct: 1 MVKVRMNTADVAAEVKCLKRLIGMRCSNVYDISPKTYMFKLLNSSGITESGESEKVLLLM 60
Query: 61 ESGVRLHTTQYVRDKSTTPSGFTLKLRKHIRSKRLEDVRMLGYDRIILFQFGLGSNAHFV 120
ESGVRLHTT YVRDKS TPSGFTLKLRKHIR++RLEDVR LGYDRII+FQFGLG+NAH+V
Sbjct: 61 ESGVRLHTTAYVRDKSNTPSGFTLKLRKHIRTRRLEDVRQLGYDRIIVFQFGLGANAHYV 120
Query: 121 ILELYAQGNILLTDSEYTVLTLLRSHRDDNKGLAIMSRHRYPVEACRVFERTDFTKLKDT 180
ILELYAQGNI+LTDSEY ++TLLRSHRDDNKG AIMSRHRYP+E CRVFERT +KL+++
Sbjct: 121 ILELYAQGNIILTDSEYMIMTLLRSHRDDNKGFAIMSRHRYPIEICRVFERTTVSKLQES 180
Query: 181 LMMNAVDDKESSQVTPGSIDAQEPSVTPSDGVPVTDKSEEPSTTTGXXXXXXXXXXXXXX 240
L + D ++ Q+ P + + +D +TG
Sbjct: 181 LTAFVLKDHDAKQIEPKEQNGGKKGGKSND-------------STGAKQY---------- 217
Query: 241 XXXXXXXXXXXTLKTLLGEALAYGPALAEHIILDAGLLPSTKVGKDPESSIDDHTIQSLV 300
TLK +LG+AL YGP L+EHIILDAGL+P+TK+ +D + +DD+ IQ LV
Sbjct: 218 -----------TLKNILGDALGYGPQLSEHIILDAGLVPTTKLSEDKK--LDDNEIQLLV 264
Query: 301 ESISKFEDWLVDVMSGQRIPEGYILMQNKAAAKKNLTPLEGSSASQKIYDEYCPVLLNQF 360
+++ FEDWL D+++GQ++PEGYILMQ + A N T E S +K+YDE+C +LLNQF
Sbjct: 265 QAVIVFEDWLEDIINGQKVPEGYILMQKQILA--NDTTSE-SGGVKKMYDEFCSILLNQF 321
Query: 361 KSREFNEFETFDAALDEFYSKIESQRVNQQQKSKEDSAAQRLNKIKLDQENRVHTLRKEV 420
KSR + +FETFDAALDEFYSKIESQR QQQK+KEDSA+ +LNKI+ DQENRV L+KEV
Sbjct: 322 KSRVYEKFETFDAALDEFYSKIESQRSEQQQKAKEDSASLKLNKIRQDQENRVQILKKEV 381
Query: 421 DHSIKMAELIEYNLEDVDAAIVAVRVSLANGMSWDALARMIKEEKKAGNPVAGLIDKLSF 480
+H + MAELIEYNLEDVDAAI+AVRV+LA GM WD LARM+KEEKK GNPVAG+ID+L
Sbjct: 382 NHCVNMAELIEYNLEDVDAAILAVRVALAKGMGWDDLARMVKEEKKLGNPVAGVIDRLYL 441
Query: 481 ERNCITLLLSNNLDDMDEEEKTAPVEKVEVDLSLSAHANARRWYELXXXXXXXXXXTVTX 540
E+NC+TLLL NNLD+MD++EKT PVEKVEVDLSLSAH NARRWYE+ TV+
Sbjct: 442 EKNCMTLLLCNNLDEMDDDEKTVPVEKVEVDLSLSAHGNARRWYEMKKKQETKQEKTVSA 501
Query: 541 XXXXXXXXXXXTRLQLAQEKTVAAITHMRKVHWFEKFNWFISSENYLIISGRDAQQNELI 600
TR QL+QEK VA I+HMRKVHWFEKFNWFISSENYL+ISGRDAQQNE+I
Sbjct: 502 HEKAFRAAEKKTRHQLSQEKVVATISHMRKVHWFEKFNWFISSENYLVISGRDAQQNEMI 561
Query: 601 VKRYMSKGDLYVHAELHGASSTIIKNHKPDNPIPPLTLNQAGSFTVCHSKAWDSKIVTSA 660
VKRYMSKGDLYVHAELHGASST+IKNHKP+ +PPLTLNQAG FTVCHS+AWDSKIVTSA
Sbjct: 562 VKRYMSKGDLYVHAELHGASSTVIKNHKPEQNVPPLTLNQAGCFTVCHSQAWDSKIVTSA 621
Query: 661 WWVYPYQVSKTAPTGEYLTVGSFMIRGKKNFLPPHPLVMGFGILFRLDESSLASHLNERR 720
WWVYP+QV+KTAPTGEYLTVGSFMIRGKKNFLPPHPL+MGFG+LFRLDESSL +HLNERR
Sbjct: 622 WWVYPHQVTKTAPTGEYLTVGSFMIRGKKNFLPPHPLIMGFGLLFRLDESSLGAHLNERR 681
Query: 721 VRGEDEEALPDVESQKLESNAELDGELDSDSETGKEKHDDESSLDNINVKKIDNPIPSNA 780
VRGE EE + DV +E++A D D++SE + N + S +
Sbjct: 682 VRGE-EEGMNDV---VMETHAP-DEHSDTESEN-----------------EAVNEVVSAS 719
Query: 781 PYVKDNADSSEQLSEIRTVVNSTTSTSKGQTSDRTVS--SQLEDLLDKNLGLGPTKVLGR 838
V D +SS LS+ + ++ ++S G T + S SQLEDLLD+ LGLG V G+
Sbjct: 720 GEV-DLQESSTALSQDTSSLDMSSS---GITEENVASATSQLEDLLDRTLGLGAATVAGK 775
Query: 839 XXXXXXXXXXVADDIDDLDTKKTSVRDKPYISKADRRKLKKGQNVGDSTSDSPNGEAAK- 897
+ + + + K VRDKPY+SKA+RRKLK GQ+ G++ +D G+ +
Sbjct: 776 KDTIETSKDDMEEKMKQ-EEKNAVVRDKPYMSKAERRKLKMGQS-GNTAADGNTGQEKQQ 833
Query: 898 ---KPVNSQQEKGKTI--EKPANPKVSRGQXXXXXXXXXXYGEQDEEEREIRMALLASSG 952
K V+S + K+I KPA KVSRGQ Y +QDE+ER+IRMALLASSG
Sbjct: 834 RKEKDVSSLSQATKSIPDNKPAGEKVSRGQRGKLKKMKEKYADQDEDERKIRMALLASSG 893
Query: 953 RASQKDKPSEDVDGATAAQSKPSTGEDDRSKICYKCKKSGHLSRDCPESTSEVDPADVNV 1012
+ + D S++ A KPS DD KICY+CKK GHL+RDC
Sbjct: 894 KPQKTDVESQNAKTAVTEVKKPSEETDDAVKICYRCKKVGHLARDCH------------- 940
Query: 1013 GRAKDGMDRSSAPAGSSVTMDEDDIHELGDEEKEKLIDLDYLTGNPLPSDILLYAVPVCA 1072
G+ MD+ V M+EDDIHE+GDEEKEKLID+DYLTGNPLP+DILLYAVPVC
Sbjct: 941 GKETSDMDK--------VVMEEDDIHEVGDEEKEKLIDVDYLTGNPLPTDILLYAVPVCG 992
Query: 1073 PYNALQAYKYRVKITPXXXXXXXXXXXXMSLFLHTADATNREKELMKACTDPELVAAIVG 1132
PYNALQ+YKYRVK P M+LF H ++A+ REKELMKACTDPEL+AA+VG
Sbjct: 993 PYNALQSYKYRVKAIPGSMKKGKAAKTAMNLFTHMSEASVREKELMKACTDPELMAALVG 1052
Query: 1133 NAKITAPGLT 1142
N KITA GLT
Sbjct: 1053 NVKITAAGLT 1062
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.312 0.129 0.361
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 23,002,398
Number of extensions: 968700
Number of successful extensions: 3392
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3389
Number of HSP's successfully gapped: 2
Length of query: 1159
Length of database: 11,106,569
Length adjustment: 109
Effective length of query: 1050
Effective length of database: 8,118,225
Effective search space: 8524136250
Effective search space used: 8524136250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 117 (49.7 bits)