Os12g0554400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Tetratricopeptide-like helical domain containing protein.
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Os12g0554400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Tetratricopeptide-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 17.31 | 0.195 | 10.7 | 0.491 | 0.161 | -0.263 | -0.766 | -1.86 | 0.11 | 4.65 | 0.7799 | 4262 | -- | -- |
| 18.67 | 0.201 | 10.7 | 0.172 | 0.222 | -0.294 | -0.597 | -- | 0.0152 | 4.56 | 30 | 3790 | -- | -- |
| 17.44 | 0.194 | 10.7 | 0.421 | 0.258 | -0.221 | -- | -1.81 | 0.0991 | 4.25 | 1.471 | 6416 | -- | -- |
| 19.89 | 0.208 | 10.7 | 0.147 | 0.234 | -0.306 | -- | -- | 0.00507 | 5.13 | 20 | 3818 | -- | -- |
| 19.63 | 0.206 | 10.7 | 0.451 | -- | 0.0541 | -- | -1.63 | 0.134 | -- | 2.9 | 7849 | -- | -- |
| 20.1 | 0.21 | 10.7 | 0.142 | 0.174 | -- | -0.713 | -- | 0.0476 | 4.81 | -- | -- | -- | -- |
| 21.3 | 0.216 | 10.7 | 0.144 | 0.172 | -- | -- | -- | 0.051 | 3.78 | -- | -- | -- | -- |
| 20.93 | 0.213 | 10.7 | 0.182 | -- | -0.223 | -- | -- | -0.0289 | -- | 56.41 | 20082 | -- | -- |
| 20.5 | 0.211 | 10.7 | -- | 0.224 | -0.308 | -- | -- | -0.00576 | 5.17 | 22.23 | 3818 | -- | -- |
| 22.93 | 0.224 | 10.7 | 0.151 | -- | -- | -- | -- | 0.0556 | -- | -- | -- | -- | -- |
| 21.84 | 0.219 | 10.7 | -- | 0.175 | -- | -- | -- | 0.035 | 3.77 | -- | -- | -- | -- |
| 21.82 | 0.218 | 10.7 | -- | -- | -0.212 | -- | -- | -0.0353 | -- | 43.9 | 20082 | -- | -- |
| 23.53 | 0.226 | 10.7 | -- | -- | -- | -- | -- | 0.0389 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 16.84 | radiation | 1 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 11 | 16.86 | wind | 3 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 14 | 16.89 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 19 | 16.91 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 4 |
| 25 | 16.93 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 9 |
| 27 | 16.94 | radiation | 1 | 4320 | < th | dose independent | rect. | 17 | 14 |
| 30 | 16.99 | radiation | 1 | 4320 | < th | dose dependent | rect. | 16 | 15 |
| 31 | 17.00 | radiation | 1 | 4320 | < th | dose independent | rect. | 17 | 2 |
| 33 | 17.00 | radiation | 1 | 4320 | < th | dose dependent | rect. | 17 | 13 |
| 45 | 17.02 | radiation | 1 | 4320 | < th | dose dependent | sin | 12 | NA |
| 57 | 17.08 | radiation | 1 | 4320 | > th | dose independent | sin | 12 | NA |
| 63 | 17.11 | radiation | 1 | 4320 | < th | dose independent | sin | 12 | NA |
| 64 | 17.11 | wind | 3 | 14400 | > th | dose independent | rect. | 11 | 3 |
| 72 | 17.13 | radiation | 1 | 4320 | < th | dose dependent | rect. | 1 | 6 |
| 76 | 17.14 | wind | 3 | 14400 | < th | dose independent | rect. | 11 | 3 |
| 79 | 17.14 | radiation | 1 | 4320 | < th | dose dependent | rect. | 5 | 2 |
| 96 | 17.15 | wind | 3 | 14400 | < th | dose dependent | rect. | 11 | 1 |
| 133 | 17.19 | temperature | 30 | 1440 | < th | dose dependent | rect. | 7 | 5 |
| 139 | 17.20 | temperature | 25 | 1440 | < th | dose independent | rect. | 2 | 10 |
| 146 | 17.21 | temperature | 25 | 1440 | > th | dose independent | rect. | 2 | 10 |
| 155 | 17.22 | temperature | 30 | 1440 | < th | dose dependent | rect. | 9 | 2 |
| 192 | 17.26 | wind | 5 | 14400 | < th | dose dependent | rect. | 11 | 4 |
| 193 | 17.26 | temperature | 10 | 1440 | > th | dose dependent | rect. | 7 | 5 |
| 195 | 17.27 | temperature | 25 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 196 | 17.27 | temperature | 25 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 199 | 17.27 | temperature | 25 | 43200 | < th | dose independent | rect. | 10 | 4 |
| 203 | 17.27 | wind | 3 | 14400 | > th | dose independent | rect. | 11 | 12 |
| 208 | 17.27 | temperature | 25 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 222 | 17.28 | radiation | 10 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 223 | 17.28 | temperature | 25 | 43200 | < th | dose independent | rect. | 10 | 2 |
| 229 | 17.28 | temperature | 25 | 43200 | > th | dose independent | rect. | 10 | 4 |
| 251 | 17.29 | temperature | 25 | 1440 | > th | dose independent | sin | 5 | NA |
| 253 | 17.29 | temperature | 25 | 43200 | > th | dose independent | rect. | 10 | 2 |
| 310 | 17.30 | temperature | 10 | 1440 | > th | dose dependent | rect. | 9 | 1 |
| 332 | 17.31 | wind | 1 | 43200 | < th | dose independent | rect. | 2 | 3 |
| 345 | 17.31 | wind | 3 | 14400 | < th | dose independent | rect. | 11 | 12 |
| 370 | 17.32 | temperature | 25 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 430 | 17.33 | temperature | 30 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 431 | 17.33 | temperature | 10 | 14400 | > th | dose dependent | rect. | 6 | 2 |
| 432 | 17.33 | temperature | 30 | 14400 | < th | dose dependent | rect. | 6 | 2 |
| 433 | 17.33 | temperature | 10 | 14400 | > th | dose dependent | rect. | 5 | 4 |
| 436 | 17.33 | temperature | 30 | 14400 | < th | dose dependent | rect. | 5 | 4 |
| 441 | 17.33 | wind | 1 | 43200 | < th | dose dependent | rect. | 2 | 6 |
| 500 | 17.34 | radiation | 1 | 4320 | < th | dose dependent | rect. | 17 | 23 |
| 502 | 17.35 | temperature | 25 | 1440 | > th | dose independent | rect. | 9 | 2 |
| 577 | 17.36 | temperature | 10 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 609 | 17.36 | temperature | 25 | 43200 | < th | dose dependent | rect. | 10 | 14 |
| 610 | 17.36 | temperature | 25 | 43200 | < th | dose dependent | rect. | 8 | 15 |
| 616 | 17.37 | wind | 3 | 14400 | < th | dose independent | rect. | 19 | 2 |
| 618 | 17.37 | radiation | 1 | 4320 | < th | dose independent | rect. | 5 | 2 |
| 619 | 17.37 | temperature | 25 | 1440 | > th | dose independent | rect. | 8 | 4 |
| 620 | 17.37 | temperature | 25 | 1440 | < th | dose independent | rect. | 8 | 4 |
| 632 | 17.37 | temperature | 25 | 43200 | < th | dose dependent | sin | 17 | NA |
| 635 | 17.37 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 710 | 17.38 | temperature | 25 | 1440 | < th | dose independent | sin | 4 | NA |
| 712 | 17.38 | temperature | 25 | 1440 | < th | dose independent | rect. | 9 | 2 |
| 714 | 17.38 | wind | 1 | 43200 | < th | dose independent | rect. | 2 | 5 |
| 734 | 17.38 | radiation | 1 | 4320 | > th | dose independent | rect. | 17 | 22 |
| 735 | 17.38 | radiation | 1 | 4320 | < th | dose independent | rect. | 17 | 22 |
| 853 | 17.39 | temperature | 10 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 944 | 17.39 | wind | 1 | 14400 | < th | dose dependent | rect. | 10 | 15 |
| 997 | 17.40 | temperature | 25 | 1440 | > th | dose independent | rect. | 23 | 20 |