BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0554400 Os12g0554400|AK072345
(1245 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0554400 Tetratricopeptide-like helical domain containi... 2459 0.0
>Os12g0554400 Tetratricopeptide-like helical domain containing protein
Length = 1245
Score = 2459 bits (6372), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1196/1245 (96%), Positives = 1196/1245 (96%)
Query: 1 MANYLAQFQTIKSSCDRIVVAVEDVSDLWLNVKESFEQRLPVKKACLNNKARNPVFVENL 60
MANYLAQFQTIKSSCDRIVVAVEDVSDLWLNVKESFEQRLPVKKACLNNKARNPVFVENL
Sbjct: 1 MANYLAQFQTIKSSCDRIVVAVEDVSDLWLNVKESFEQRLPVKKACLNNKARNPVFVENL 60
Query: 61 PAEFIQTTDSRLRSRFPQDQYLFWFREPYATVVLVSCEDLDEFKTILKPRLKLIVQNDER 120
PAEFIQTTDSRLRSRFPQDQYLFWFREPYATVVLVSCEDLDEFKTILKPRLKLIVQNDER
Sbjct: 61 PAEFIQTTDSRLRSRFPQDQYLFWFREPYATVVLVSCEDLDEFKTILKPRLKLIVQNDER 120
Query: 121 EWFIVFVSKAHPSNDQASKMAKRVYARLESDFNTKKRERCCKFDLHGPDAEFWDDFDSKM 180
EWFIVFVSKAHPSNDQASKMAKRVYARLESDFNTKKRERCCKFDLHGPDAEFWDDFDSKM
Sbjct: 121 EWFIVFVSKAHPSNDQASKMAKRVYARLESDFNTKKRERCCKFDLHGPDAEFWDDFDSKM 180
Query: 181 VDCIRNTLDRRVQFYEEEIRRLSEQRFTPIWNFCNFFILKESLAFMFEMTNLHEDSLREY 240
VDCIRNTLDRRVQFYEEEIRRLSEQRFTPIWNFCNFFILKESLAFMFEMTNLHEDSLREY
Sbjct: 181 VDCIRNTLDRRVQFYEEEIRRLSEQRFTPIWNFCNFFILKESLAFMFEMTNLHEDSLREY 240
Query: 241 DELELCYSESVNSPGKHREFGGLDTGDDQAALLNPGFKALTQIVQDDVFREFEFRQYIFA 300
DELELCYSESVNSPGKHREFGGLDTGDDQAALLNPGFKALTQIVQDDVFREFEFRQYIFA
Sbjct: 241 DELELCYSESVNSPGKHREFGGLDTGDDQAALLNPGFKALTQIVQDDVFREFEFRQYIFA 300
Query: 301 CQAKLLFKLHRPIEVAARGYAFVVSFSKTLALQENGLPFCFREVWVITACMDLIKATTSH 360
CQAKLLFKLHRPIEVAARGYAFVVSFSKTLALQENGLPFCFREVWVITACMDLIKATTSH
Sbjct: 301 CQAKLLFKLHRPIEVAARGYAFVVSFSKTLALQENGLPFCFREVWVITACMDLIKATTSH 360
Query: 361 YDGTAVAIDSEREFCRIQGDLYSLCRIKFLRLAYLIGYGVEIEKSPVNSASLSMLPWPKP 420
YDGTAVAIDSEREFCRIQGDLYSLCRIKFLRLAYLIGYGVEIEKSPVNSASLSMLPWPKP
Sbjct: 361 YDGTAVAIDSEREFCRIQGDLYSLCRIKFLRLAYLIGYGVEIEKSPVNSASLSMLPWPKP 420
Query: 421 ATWPSIPPDSSAETMAKEKMILQAKSREKIFNIHRKXXXXXXXXXXREANRRRAFLSVGN 480
ATWPSIPPDSSAETMAKEKMILQAKSREKIFNIHRK REANRRRAFLSVGN
Sbjct: 421 ATWPSIPPDSSAETMAKEKMILQAKSREKIFNIHRKPLPLEPSLLLREANRRRAFLSVGN 480
Query: 481 ISELYDSGDGSGLDXXXXXXXXXXXXXYMARTMSGPATSETSLPVDRPMRLSEIHVAAEH 540
ISELYDSGDGSGLD YMARTMSGPATSETSLPVDRPMRLSEIHVAAEH
Sbjct: 481 ISELYDSGDGSGLDANSKPSPNKSASNYMARTMSGPATSETSLPVDRPMRLSEIHVAAEH 540
Query: 541 ALKQTVSDPNFMTSLSSLEEFEKRYMELTKGAADNYHHSWWKRHGVVLDGEIAALFFKHE 600
ALKQTVSDPNFMTSLSSLEEFEKRYMELTKGAADNYHHSWWKRHGVVLDGEIAALFFKHE
Sbjct: 541 ALKQTVSDPNFMTSLSSLEEFEKRYMELTKGAADNYHHSWWKRHGVVLDGEIAALFFKHE 600
Query: 601 NYDLAAKSYEKVCALYSAEGWEELLADVLPDLAECQKILNDEAGYLTSCVKLLSLESGLF 660
NYDLAAKSYEKVCALYSAEGWEELLADVLPDLAECQKILNDEAGYLTSCVKLLSLESGLF
Sbjct: 601 NYDLAAKSYEKVCALYSAEGWEELLADVLPDLAECQKILNDEAGYLTSCVKLLSLESGLF 660
Query: 661 SSKERQAFQSEVVRLAHSEMKHPVPLDVSSLITFAGNPAPPLELCDGDPGTLSVAVWSAF 720
SSKERQAFQSEVVRLAHSEMKHPVPLDVSSLITFAGNPAPPLELCDGDPGTLSVAVWSAF
Sbjct: 661 SSKERQAFQSEVVRLAHSEMKHPVPLDVSSLITFAGNPAPPLELCDGDPGTLSVAVWSAF 720
Query: 721 PDDITXXXXXXXXXXXXXADEGLKAIKSSDARVLVPGRNIITFDIPPQKPGSYVLGALTG 780
PDDIT ADEGLKAIKSSDARVLVPGRNIITFDIPPQKPGSYVLGALTG
Sbjct: 721 PDDITLESLSLRLSASSSADEGLKAIKSSDARVLVPGRNIITFDIPPQKPGSYVLGALTG 780
Query: 781 QIGKLSFRSHGFSQDGPVDTDEFMSFEKPTRPVLKVRKPRALVDITPAVSSALLMNELQW 840
QIGKLSFRSHGFSQDGPVDTDEFMSFEKPTRPVLKVRKPRALVDITPAVSSALLMNELQW
Sbjct: 781 QIGKLSFRSHGFSQDGPVDTDEFMSFEKPTRPVLKVRKPRALVDITPAVSSALLMNELQW 840
Query: 841 IGLIVKPIDYSLKDGILHIDAGAGLKIEESQMIEIETYGSDVEHVGGXXXXXXXXXXXXX 900
IGLIVKPIDYSLKDGILHIDAGAGLKIEESQMIEIETYGSDVEHVGG
Sbjct: 841 IGLIVKPIDYSLKDGILHIDAGAGLKIEESQMIEIETYGSDVEHVGGTDASKTSSSSTDT 900
Query: 901 RKVEKVPIEDGKIKIPDWASDVTTLVWFPVRAIDDTIARGASPASPQKQSIVDGMRMIAL 960
RKVEKVPIEDGKIKIPDWASDVTTLVWFPVRAIDDTIARGASPASPQKQSIVDGMRMIAL
Sbjct: 901 RKVEKVPIEDGKIKIPDWASDVTTLVWFPVRAIDDTIARGASPASPQKQSIVDGMRMIAL 960
Query: 961 KLEFGVFLNQVFERTIAVHFTNPFHVSTRVVDKCYDGTLLLQVILHSEVKATLHVKDIWL 1020
KLEFGVFLNQVFERTIAVHFTNPFHVSTRVVDKCYDGTLLLQVILHSEVKATLHVKDIWL
Sbjct: 961 KLEFGVFLNQVFERTIAVHFTNPFHVSTRVVDKCYDGTLLLQVILHSEVKATLHVKDIWL 1020
Query: 1021 DLQSGFEHTGKGDGRPTSNLFPLVIAPSSRAGILFVIRLSALGDMDELEKADSMLNIKYG 1080
DLQSGFEHTGKGDGRPTSNLFPLVIAPSSRAGILFVIRLSALGDMDELEKADSMLNIKYG
Sbjct: 1021 DLQSGFEHTGKGDGRPTSNLFPLVIAPSSRAGILFVIRLSALGDMDELEKADSMLNIKYG 1080
Query: 1081 ISGDRTTGAHSPVPVKPDDSEELVFKIAVKMKRPVLDPCVAVGFLPFSSDCLRVGQLVNM 1140
ISGDRTTGAHSPVPVKPDDSEELVFKIAVKMKRPVLDPCVAVGFLPFSSDCLRVGQLVNM
Sbjct: 1081 ISGDRTTGAHSPVPVKPDDSEELVFKIAVKMKRPVLDPCVAVGFLPFSSDCLRVGQLVNM 1140
Query: 1141 RWRVERLKNPEDASLLADEILYQVDANPQNWMVAGRKCGHVSLSNKQGSRIEITVTCVPL 1200
RWRVERLKNPEDASLLADEILYQVDANPQNWMVAGRKCGHVSLSNKQGSRIEITVTCVPL
Sbjct: 1141 RWRVERLKNPEDASLLADEILYQVDANPQNWMVAGRKCGHVSLSNKQGSRIEITVTCVPL 1200
Query: 1201 VSGYVHPPQLGLPHVGEANISCNPAGPHLVCVLPPTLSTSYCIPA 1245
VSGYVHPPQLGLPHVGEANISCNPAGPHLVCVLPPTLSTSYCIPA
Sbjct: 1201 VSGYVHPPQLGLPHVGEANISCNPAGPHLVCVLPPTLSTSYCIPA 1245
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.136 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 42,100,892
Number of extensions: 1775280
Number of successful extensions: 3584
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 3582
Number of HSP's successfully gapped: 1
Length of query: 1245
Length of database: 17,035,801
Length adjustment: 112
Effective length of query: 1133
Effective length of database: 11,187,833
Effective search space: 12675814789
Effective search space used: 12675814789
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 162 (67.0 bits)