BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0554400 Os12g0554400|AK072345
(1245 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G54440.1 | chr5:22100056-22107695 FORWARD LENGTH=1260 1715 0.0
>AT5G54440.1 | chr5:22100056-22107695 FORWARD LENGTH=1260
Length = 1259
Score = 1715 bits (4442), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 828/1260 (65%), Positives = 990/1260 (78%), Gaps = 19/1260 (1%)
Query: 1 MANYLAQFQTIKSSCDRIVVAVEDVSDLWLNVKESFEQRLPVKKACLNNKARNPVFVENL 60
MANYLAQFQTIK+SCDR+V AVEDV DLW VK FE+ P+K+A L NK RNPVFVENL
Sbjct: 1 MANYLAQFQTIKNSCDRLVAAVEDVCDLWPTVKGLFEEHQPLKRAFLTNKTRNPVFVENL 60
Query: 61 PAEFIQTTDSRLRSRFPQDQYLFWFREPYATVVLVSCEDLDEFKTILKPRLKLIVQNDER 120
P EFI TTD+RLRSRFPQ+QYLFWFREPYAT+VLV+CEDLDEFK ILKPRLKLIVQNDER
Sbjct: 61 PVEFILTTDARLRSRFPQEQYLFWFREPYATIVLVTCEDLDEFKNILKPRLKLIVQNDER 120
Query: 121 EWFIVFVSKAHPSNDQASKMAKRVYARLESDFNTKKRERCCKFDLHGPDAEFWDDFDSKM 180
EWFIVFVSKAHPSNDQA+K K+VYA+LE DF++KKRERCCK D+HGP+ FW+D + K+
Sbjct: 121 EWFIVFVSKAHPSNDQATKNVKKVYAKLEVDFSSKKRERCCKLDVHGPEGNFWEDLELKI 180
Query: 181 VDCIRNTLDRRVQFYEEEIRRLSEQRFTPIWNFCNFFILKESLAFMFEMTNLHEDSLREY 240
+CIRNTLDRR QFYE+EIR+LSEQRF PIWNFCNFFILKESLAF+FEM +LHED+LREY
Sbjct: 181 TECIRNTLDRRAQFYEDEIRKLSEQRFMPIWNFCNFFILKESLAFIFEMAHLHEDALREY 240
Query: 241 DELELCYSESVNSPGKHREFGGLDTGDDQAALLNPGFKALTQIVQDDVFREFEFRQYIFA 300
DELELCY E+VN PGK R+FGG D DDQA LL PG K LTQIVQDD FREFEFRQY+FA
Sbjct: 241 DELELCYLETVNMPGKQRDFGGFDGEDDQAVLLKPGSKPLTQIVQDDSFREFEFRQYLFA 300
Query: 301 CQAKLLFKLHRPIEVAARGYAFVVSFSKTLALQENGLPFCFREVWVITACMDLIKATTSH 360
CQ++LLFKL+RP EVA+RGY+FV+SF+K L L E+ LPFC REVWVITAC+ LI+AT SH
Sbjct: 301 CQSRLLFKLNRPFEVASRGYSFVISFAKALTLHESVLPFCMREVWVITACLALIEATASH 360
Query: 361 YDGTAVAIDSEREFCRIQGDLYSLCRIKFLRLAYLIGYGVEIEKSPVNSASLSMLPWPKP 420
+ VA D E+EF R+QGDLYSL R+KF+RL YLIGYG +IEKSP+NSA LSMLPWPKP
Sbjct: 361 HHDGVVAPDIEKEFFRLQGDLYSLSRVKFMRLGYLIGYGTDIEKSPLNSACLSMLPWPKP 420
Query: 421 ATWPSIPPDSSAETMAKEKMILQAKSREKIFNIHRKXXXXXXXXXXREANRRRAFLSVGN 480
A WPS+P D+S+E + KEK ILQA SR K F I RK R ANRRRA LS GN
Sbjct: 421 AVWPSLPQDASSEVLEKEKTILQATSRTKHFGIQRKALPLEPSVLLRVANRRRASLSTGN 480
Query: 481 ISELYDS----GDGSGLDXX-XXXXXXXXXXXYMARTMSGPATSETSLPVDRPMRLSEIH 535
I E++D +GSGL+ M+RT S P E+ P+DRPMRL+EI
Sbjct: 481 IPEMFDGRPSFTEGSGLEASPRTPSSLKVQAPPMSRTNSSPGNFES--PLDRPMRLAEIF 538
Query: 536 VAAEHALKQTVSDPNFMTSLSSLEEFEKRYMELTKGAADNYHHSWWKRHGVVLDGEIAAL 595
VAAEHAL+ T+SD + + +LSS+++FE +Y+ LTKGAA+NYH SWWKRHGVVLDGEIAA+
Sbjct: 539 VAAEHALRLTISDHDLLKTLSSIQDFENKYLNLTKGAAENYHRSWWKRHGVVLDGEIAAV 598
Query: 596 FFKHENYDLAAKSYEKVCALYSAEGWEELLADVLPDLAECQKILNDEAGYLTSCVKLLSL 655
FKH YDLAA SYEKVCALY+ EGW++LLA+VLP+LA+CQKIL+D+AGY++SCV+LLSL
Sbjct: 599 CFKHGKYDLAANSYEKVCALYAGEGWQDLLAEVLPNLAQCQKILDDQAGYMSSCVRLLSL 658
Query: 656 ESGLFSSKERQAFQSEVVRLAHSEMKHPVPLDVSSLITFAGNPAPPLELCDGDPGTLSVA 715
+ GLFSSKERQAFQSEVV LAHSEMK+PVPLDVSSLITF+GN PPL+LCDGDPG LSV
Sbjct: 659 DKGLFSSKERQAFQSEVVTLAHSEMKNPVPLDVSSLITFSGNTGPPLQLCDGDPGNLSVT 718
Query: 716 VWSAFPDDITXXXXXXXXXXXXXADEGLKAIKSSDARVLVPGRNIITFDIPPQKPGSYVL 775
VWS FPDDIT DEG +A+KSS A VL PGRN ITF +PPQKPGSYVL
Sbjct: 719 VWSGFPDDITLDSLSLTLVATNNTDEGGQALKSSAATVLNPGRNTITFALPPQKPGSYVL 778
Query: 776 GALTGQIGKLSFRSHGFSQDGPVDTDEFMSFEKPTRPVLKVRKPRALVDITPAVSSALLM 835
G +TGQIG+L FRSH FS+ GP D+D+FMS+EKPTRP+LKV KPRALVD+ AVSSALL+
Sbjct: 779 GVVTGQIGRLRFRSHSFSKGGPADSDDFMSYEKPTRPILKVSKPRALVDLAAAVSSALLI 838
Query: 836 NELQWIGLIVKPIDYSLKDGILHIDAGAGLKIEESQMIEIETYGSDVEHVGGXXXXXXXX 895
NE QWIG+IV+PI YSLK ILHID G GLKIE+S IE+E Y G
Sbjct: 839 NEAQWIGIIVRPIAYSLKGAILHIDTGPGLKIEDSYGIEMERYMDADCDTGASKAEVFVE 898
Query: 896 XX--XXXRKVEKVPIEDGKIKIPDWASDVTTLVWFPVRAIDDTIARGASPASPQKQSIVD 953
R E + + DGKI DWAS+V++++W PVRA+ + +ARG+S +P KQ I++
Sbjct: 899 DSPVSSKRDSEVLNLCDGKIVFSDWASNVSSILWVPVRALSEKLARGSSSVTPLKQDILE 958
Query: 954 GMRMIALKLEFGVFLNQVFERTIAVHFTNPFHVSTRVVDKCYDGTLLLQVILHSEVKATL 1013
GMR +ALKLEFGV NQ+FERTIA HFT+PF V+TRV +KC DGTL+LQV+LHS VKA L
Sbjct: 959 GMRTVALKLEFGVHHNQIFERTIAAHFTDPFDVTTRVANKCNDGTLVLQVMLHSLVKANL 1018
Query: 1014 HVKDIWLDLQSGFEHTGKGDGRPTSNLFPLVIAPSSRAGILFVIRL--SALGDMDELEKA 1071
V D+WLDLQ GF H G+ DGRPTS FPLV++P SRA ++F I L S + +L+
Sbjct: 1019 IVLDVWLDLQDGFIH-GQNDGRPTSTFFPLVVSPGSRAAVVFSICLDKSMSSEGKDLQLP 1077
Query: 1072 DSMLNIKYGISGDRTTGAHSPVPVKPDDSE----ELVFKIAVKMKRPVLDPCVAVGFLPF 1127
+S+LNIKYGI GDR GAH PV +++ +LVFK A+ ++RPVLDPC+ VGFLP
Sbjct: 1078 ESILNIKYGIHGDRAAGAHRPVDADHSETDTEGRDLVFKSAIVLQRPVLDPCLTVGFLPL 1137
Query: 1128 SSDCLRVGQLVNMRWRVERLKNPEDASLLA---DEILYQVDANPQNWMVAGRKCGHVSLS 1184
SD LRVG+L+ M+WRVERLK +++ + DE+LY+V+AN +NWM+AGRK GHVSLS
Sbjct: 1138 PSDGLRVGKLITMQWRVERLKELKESEAVEQQHDEVLYEVNANSENWMIAGRKRGHVSLS 1197
Query: 1185 NKQGSRIEITVTCVPLVSGYVHPPQLGLPHVGEANISCNPAGPHLVCVLPPTLSTSYCIP 1244
+QGSR+ I++ CVPLV+GYV PPQLGLP+V EAN+S NP+GPHLVCVLPP LS+SYC+P
Sbjct: 1198 EEQGSRVVISILCVPLVAGYVRPPQLGLPNVEEANVSSNPSGPHLVCVLPPLLSSSYCLP 1257
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.136 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 26,868,989
Number of extensions: 1145935
Number of successful extensions: 2503
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2497
Number of HSP's successfully gapped: 1
Length of query: 1245
Length of database: 11,106,569
Length adjustment: 110
Effective length of query: 1135
Effective length of database: 8,090,809
Effective search space: 9183068215
Effective search space used: 9183068215
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 118 (50.1 bits)