Os12g0535900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Plus-3 domain containing protein.
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Os12g0535900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Plus-3 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 13.09 | 0.17 | 11.1 | 0.69 | 0.519 | 0.87 | -0.706 | -1.47 | 0.113 | 19.4 | 1.268 | 926 | -- | -- |
| 13.27 | 0.17 | 11.1 | 0.636 | 0.56 | 0.984 | 0.213 | -- | 0.0857 | 19.7 | 0.5316 | 964 | -- | -- |
| 13.19 | 0.169 | 11.1 | 0.687 | 0.553 | 0.964 | -- | -0.544 | 0.11 | 19.4 | 0.9273 | 945 | -- | -- |
| 13.38 | 0.17 | 11.1 | 0.657 | 0.633 | 1.09 | -- | -- | 0.106 | 19.7 | 0.56 | 959 | -- | -- |
| 15.36 | 0.183 | 11.1 | 0.604 | -- | 0.171 | -- | -0.294 | 0.0949 | -- | 33.85 | 1240 | -- | -- |
| 15.92 | 0.187 | 11.1 | 0.54 | 0.0623 | -- | -0.234 | -- | 0.0425 | 6.16 | -- | -- | -- | -- |
| 16.03 | 0.187 | 11.1 | 0.538 | 0.0639 | -- | -- | -- | 0.0436 | 7.34 | -- | -- | -- | -- |
| 14.36 | 0.176 | 11.1 | 0.635 | -- | 0.391 | -- | -- | 0.107 | -- | 0.3595 | 1390 | -- | -- |
| 23.31 | 0.225 | 11.2 | -- | 0.197 | 0.389 | -- | -- | 0.00214 | 18.9 | 1.8 | 856 | -- | -- |
| 16.24 | 0.188 | 11.1 | 0.54 | -- | -- | -- | -- | 0.0447 | -- | -- | -- | -- | -- |
| 23.67 | 0.228 | 11.2 | -- | 0.0697 | -- | -- | -- | -0.0164 | 6.82 | -- | -- | -- | -- |
| 23.16 | 0.224 | 11.1 | -- | -- | 0.178 | -- | -- | -0.00669 | -- | 10 | 1294 | -- | -- |
| 23.92 | 0.228 | 11.2 | -- | -- | -- | -- | -- | -0.0152 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 12.72 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 2 | 12.72 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 4 |
| 4 | 12.72 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 5 | 12.72 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 4 |
| 9 | 12.74 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 23 | 12.79 | radiation | 1 | 1440 | > th | dose independent | rect. | 10 | 4 |
| 47 | 12.86 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 62 | 12.90 | humidity | 80 | 1440 | < th | dose independent | rect. | 12 | 1 |
| 74 | 12.93 | humidity | 80 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 80 | 12.96 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 189 | 13.14 | humidity | 70 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 201 | 13.20 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 231 | 13.22 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 14 |
| 296 | 13.29 | radiation | 1 | 1440 | > th | dose independent | sin | 18 | NA |
| 298 | 13.29 | radiation | 1 | 1440 | < th | dose independent | sin | 18 | NA |
| 308 | 13.30 | humidity | 80 | 1440 | < th | dose independent | rect. | 24 | 17 |
| 397 | 13.35 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 402 | 13.36 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 10 |
| 480 | 13.42 | humidity | 80 | 1440 | > th | dose independent | rect. | 24 | 17 |
| 495 | 13.43 | radiation | 1 | 1440 | < th | dose dependent | sin | 19 | NA |
| 529 | 13.45 | humidity | 80 | 1440 | > th | dose independent | rect. | 3 | 14 |
| 560 | 13.47 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 10 |
| 579 | 13.48 | humidity | 80 | 1440 | < th | dose independent | sin | 1 | NA |
| 603 | 13.50 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 4 |
| 642 | 13.54 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 675 | 13.56 | humidity | 80 | 1440 | > th | dose independent | sin | 0 | NA |