BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0535900 Os12g0535900|AK069422
(599 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0535900 Plus-3 domain containing protein 931 0.0
>Os12g0535900 Plus-3 domain containing protein
Length = 599
Score = 931 bits (2407), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 475/599 (79%), Positives = 475/599 (79%)
Query: 1 KRPPSGSQVPLKKRHQPEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPS 60
KRPPSGSQVPLKKRHQPEK APS
Sbjct: 1 KRPPSGSQVPLKKRHQPEKGGGRGGGGGGWKEGDDDDDDDDDDELDEGRRSGDDSDSAPS 60
Query: 61 VGSDLYKDEDDKEQLEKMSELDREMILAERGARIDDYKLKQLXXXXXXXXXXXXXXXXXX 120
VGSDLYKDEDDKEQLEKMSELDREMILAERGARIDDYKLKQL
Sbjct: 61 VGSDLYKDEDDKEQLEKMSELDREMILAERGARIDDYKLKQLARASSSSSKADKSRRDSS 120
Query: 121 XXXXXXXXXXXXXXXXXXXXXXLDELRAKRMRQQDPEGYRNRFKDLIXXXXXXXXXXXXX 180
LDELRAKRMRQQDPEGYRNRFKDLI
Sbjct: 121 PPPPPSRARSSARTDRSAAKSALDELRAKRMRQQDPEGYRNRFKDLIPQSGSPPRRRAGS 180
Query: 181 XXXXXXNDGDNRGRITDETRDDEFDESPSRLDPLKFDDVKSITLRRSKLVKWFMEPFFED 240
NDGDNRGRITDETRDDEFDESPSRLDPLKFDDVKSITLRRSKLVKWFMEPFFED
Sbjct: 181 PPSDGSNDGDNRGRITDETRDDEFDESPSRLDPLKFDDVKSITLRRSKLVKWFMEPFFED 240
Query: 241 LVSGCFVRLGIGKSKSGTPDYRLCIVRNVDANDPDRKYKLEGYTTCKYLNVVWDNEANAA 300
LVSGCFVRLGIGKSKSGTPDYRLCIVRNVDANDPDRKYKLEGYTTCKYLNVVWDNEANAA
Sbjct: 241 LVSGCFVRLGIGKSKSGTPDYRLCIVRNVDANDPDRKYKLEGYTTCKYLNVVWDNEANAA 300
Query: 301 RWQMTQVSDSFPSEEEFKKWLQVAEKNGVRVPTRQDVLEKKEAIQQAYNFVYSAHTVQKM 360
RWQMTQVSDSFPSEEEFKKWLQVAEKNGVRVPTRQDVLEKKEAIQQAYNFVYSAHTVQKM
Sbjct: 301 RWQMTQVSDSFPSEEEFKKWLQVAEKNGVRVPTRQDVLEKKEAIQQAYNFVYSAHTVQKM 360
Query: 361 LKEKKSAIRRPINVAAEKDRLRNELDMXXXXXXXXXXXXXXSKLNQLQKMSKPISNNEKA 420
LKEKKSAIRRPINVAAEKDRLRNELDM SKLNQLQKMSKPISNNEKA
Sbjct: 361 LKEKKSAIRRPINVAAEKDRLRNELDMAIARRDEAEAERIRSKLNQLQKMSKPISNNEKA 420
Query: 421 AKLEAMNKKNRAENFKNASEMKPVNTSLKVGEAGYDPFSRRWTRSRNYYAAKPEGESAEV 480
AKLEAMNKKNRAENFKNASEMKPVNTSLKVGEAGYDPFSRRWTRSRNYYAAKPEGESAEV
Sbjct: 421 AKLEAMNKKNRAENFKNASEMKPVNTSLKVGEAGYDPFSRRWTRSRNYYAAKPEGESAEV 480
Query: 481 PNGNDGSAVAGDEDTKNGPRGGSXXXXXXXXXXXXXGKLVDTNAPVDLGTESNLLHNFEL 540
PNGNDGSAVAGDEDTKNGPRGGS GKLVDTNAPVDLGTESNLLHNFEL
Sbjct: 481 PNGNDGSAVAGDEDTKNGPRGGSAATAAALVAAADAGKLVDTNAPVDLGTESNLLHNFEL 540
Query: 541 GISLAGLEEFGGPKGLFDGYMARKQKIEATMGYKVPDNDGRRHALTLTVSDYKRRRGLL 599
GISLAGLEEFGGPKGLFDGYMARKQKIEATMGYKVPDNDGRRHALTLTVSDYKRRRGLL
Sbjct: 541 GISLAGLEEFGGPKGLFDGYMARKQKIEATMGYKVPDNDGRRHALTLTVSDYKRRRGLL 599
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.132 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,857,503
Number of extensions: 634683
Number of successful extensions: 1354
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1352
Number of HSP's successfully gapped: 2
Length of query: 599
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 492
Effective length of database: 11,448,903
Effective search space: 5632860276
Effective search space used: 5632860276
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 159 (65.9 bits)