BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0535900 Os12g0535900|AK069422
         (599 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G61040.1  | chr1:22483817-22485748 FORWARD LENGTH=644          465   e-131

>AT1G61040.1 | chr1:22483817-22485748 FORWARD LENGTH=644
          Length = 643

 Score =  465 bits (1197), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 271/619 (43%), Positives = 342/619 (55%), Gaps = 50/619 (8%)

Query: 2   RPPSGSQVPLKKRHQPEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPSV 61
           R PSGSQVPLKKR + E+                                          
Sbjct: 54  RKPSGSQVPLKKRLEAEREDRAARVEGGYGDGPSDREGDSSEES--------------DF 99

Query: 62  GSDLYKDEDDKEQLEKMSELDREMILAERGARIDD--YKLKQLXXXXXXXXXXXXXXXXX 119
           G DLYK+E+D+++L  M+E  REMIL+ER  +  D  +  K                   
Sbjct: 100 GDDLYKNEEDRQKLAGMTEFQREMILSERADKKGDKNFTEKLRSKRESEKTPVSKKETQP 159

Query: 120 XXXXXXXXXXXXXXXXXXXXXXXLDELRAKRMRQQDPEGYR-----------------NR 162
                                  L+ELRAKRM+QQDP   R                  +
Sbjct: 160 LPASRGVRSSARSADRAAAKDDALNELRAKRMKQQDPAALRKLRDASKGGSGSRDFSSTK 219

Query: 163 FKDLIXXXXXXXXXXXXXXXXXXXNDGDNRGRITDETRDDEFDESPSRLDPLKFDDVKSI 222
            K L                    ++G N G +     DD+  + P+      F+DVK +
Sbjct: 220 RKPLASSNLSSSSQSDSDSRSQSDDEGSNGGMLDS---DDDRSDVPT------FEDVKEV 270

Query: 223 TLRRSKLVKWFMEPFFEDLVSGCFVRLGIGKSKSGTPDYRLCIVRNVDANDPDRKYKLEG 282
           T+RRSKL KW MEPFFE+L+ GCFVR+GIG+SKSG P YRLC V+NVDA DPD+ YKLE 
Sbjct: 271 TIRRSKLAKWLMEPFFEELIVGCFVRVGIGRSKSG-PIYRLCWVKNVDATDPDKTYKLEN 329

Query: 283 YTTCKYLNVVWDNEANAARWQMTQVSDSFPSEEEFKKWLQVAEKNGVRVPTRQDVLEKKE 342
            TT KYLNVVW NE +AARWQM  +SD  P EEE+++W++  E+   R+PT+QD+ EKKE
Sbjct: 330 KTTHKYLNVVWGNETSAARWQMAMISDGHPLEEEYRQWIREVERTNGRMPTKQDISEKKE 389

Query: 343 AIQQAYNFVYSAHTVQKMLKEKKSAIRRPINVAAEKDRLRNELDMXXXXXXXXXXXXXXS 402
           AIQ+  +FVYSA TV++ML+EKKSA  RP+NVAAEKDRLR EL++              S
Sbjct: 390 AIQRTNSFVYSAETVKQMLQEKKSASVRPMNVAAEKDRLRKELEIAQSKNDEAGVERIKS 449

Query: 403 KLNQLQKMSKPISNNEKAAKLEAMNKKNRAENFKNASEMKPVNTSLKVGEAGYDPFSRRW 462
           K+ QL         ++KA KL  MNKKNRAENFKNASE+K +  SLK GEAGYDPFSRRW
Sbjct: 450 KIKQLDASRNKKGVDKKALKLAEMNKKNRAENFKNASEVKSITASLKAGEAGYDPFSRRW 509

Query: 463 TRSRNYYAAKPEGESAEVPNGNDGSAVAGDEDTKNGPRGGS--XXXXXXXXXXXXXGKLV 520
           TRS NYY  K +G+     +G +  A        NG   G+               GKL+
Sbjct: 510 TRSSNYYNGKNKGK-----DGEENEAAVAAAVETNGADAGAGVEATEAALEAAAEAGKLI 564

Query: 521 DTNAPVDLGTESNLLHNFELGISLAGLEEFGGPKGLFDGYMARKQKIEATMGYKVPDNDG 580
           DT AP+  G E N LHNFEL +SL  L+++GGP+G+   +MARKQ  EAT+G +V +NDG
Sbjct: 565 DTRAPIGQGAEHNQLHNFELSLSLTALQKYGGPQGVQKAFMARKQLTEATVGCRVAENDG 624

Query: 581 RRHALTLTVSDYKRRRGLL 599
           +RH LTLTVSDYKRRRGLL
Sbjct: 625 KRHGLTLTVSDYKRRRGLL 643



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.313    0.132    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,020,670
Number of extensions: 429272
Number of successful extensions: 900
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 898
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 495
Effective length of database: 8,255,305
Effective search space: 4086375975
Effective search space used: 4086375975
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 115 (48.9 bits)