FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0515600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Guanylate kinase (EC 2.7.4.8).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.2 (0.0338) R2 : 0.689
β1 : -1.45 (0.124) R2dD : 0.0971 R2D : 0.0774
β2 : 1.51 (0.0904) R2dC : 0.201 R2C : 0.297
β3 : 1.34 (0.0663) R2dE : 0.292 R2E : 0.399
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.267 (0.0721) R2dN8 : 0.0125 R2N8 : -0.000892
σ : 0.631
deviance : 183.61
__
_____
C
peak time of C : 5.9
E
wheather : radiation
threshold : 3.442
memory length : 122
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
181.02 0.632 11.3 -1.47 1.56 1.22 -0.391 0.784 -0.292 5.52 6.772 119 -- --
183.59 0.631 11.3 -1.49 1.55 1.26 -0.22 -- -0.284 5.7 3.377 118 -- --
180.75 0.626 11.3 -1.46 1.52 1.26 -- 0.705 -0.281 5.7 3.393 122 -- --
183.61 0.631 11.2 -1.45 1.51 1.34 -- -- -0.267 5.9 3.442 122 -- --
203.19 0.664 11.3 -1.45 -- 2.34 -- 0.45 -0.234 -- 5.62 450 -- --
202.8 0.668 11.3 -1.49 2.42 -- 0.603 -- -0.348 3.32 -- -- -- --
203.95 0.669 11.3 -1.5 2.43 -- -- -- -0.352 3.34 -- -- -- --
203.59 0.665 11.3 -1.43 -- 2.33 -- -- -0.231 -- 5.58 451 -- --
238.52 0.719 11.2 -- 1.48 1.31 -- -- -0.121 5.85 2.712 126 -- --
536.47 1.08 11.3 -1.4 -- -- -- -- -0.288 -- -- -- -- --
263.32 0.759 11.2 -- 2.4 -- -- -- -0.184 3.34 -- -- -- --
251.93 0.739 11.2 -- -- 2.28 -- -- -0.121 -- 0.5859 450 -- --
588.02 1.13 11.2 -- -- -- -- -- -0.132 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 172.71 radiation 1.0 90 < th dose independent rect. 3 20
2 172.72 radiation 1.0 90 < th dose dependent rect. 3 20
3 174.39 radiation 30.0 270 < th dose dependent rect. 15 14
4 174.78 radiation 1.0 90 < th dose dependent rect. 3 18
5 174.82 radiation 10.0 270 < th dose independent rect. 15 14
17 176.26 atmosphere 1005.0 30 > th dose independent rect. 23 4
19 176.49 atmosphere 1005.0 270 > th dose independent rect. 23 1
23 176.77 humidity 50.0 30 > th dose dependent rect. 16 14
27 176.83 atmosphere 1000.0 30 > th dose dependent rect. 23 4
35 177.37 radiation 1.0 270 < th dose dependent rect. 24 21
36 177.44 radiation 10.0 720 < th dose independent rect. 14 7
50 177.91 humidity 50.0 270 > th dose independent rect. 16 13
56 178.05 atmosphere 1000.0 270 > th dose dependent rect. 23 1
58 178.12 radiation 10.0 270 < th dose dependent rect. 9 20
62 178.28 radiation 1.0 90 < th dose dependent sin 0 NA
65 178.34 humidity 50.0 30 > th dose dependent rect. 3 20
79 178.72 radiation 10.0 270 < th dose independent rect. 9 20
80 178.72 humidity 50.0 270 > th dose dependent rect. 15 14
85 178.85 radiation 1.0 270 < th dose independent rect. 24 21
114 179.30 temperature 10.0 30 > th dose dependent rect. 6 21
123 179.43 temperature 15.0 30 > th dose dependent rect. 3 3
141 179.88 precipitation 0.1 90 < th dose independent rect. 5 22
142 179.88 precipitation 0.1 90 < th dose dependent rect. 5 22
147 180.02 radiation 10.0 90 < th dose dependent rect. 7 23
151 180.03 humidity 60.0 30 > th dose dependent rect. 12 18
154 180.05 humidity 50.0 30 > th dose dependent rect. 19 11
215 180.87 radiation 1.0 90 < th dose independent rect. 3 14
219 180.88 radiation 1.0 90 > th dose independent sin 1 NA
220 180.88 radiation 1.0 90 < th dose independent rect. 3 4
224 180.93 radiation 10.0 720 < th dose dependent rect. 9 12
250 181.15 radiation 10.0 30 < th dose dependent rect. 3 23
254 181.22 radiation 1.0 90 < th dose independent rect. 3 10
255 181.23 radiation 1.0 90 < th dose dependent rect. 3 10
261 181.25 temperature 15.0 270 > th dose independent rect. 16 13
262 181.25 radiation 1.0 90 < th dose dependent rect. 3 15
271 181.32 temperature 20.0 30 > th dose independent rect. 19 11
272 181.32 atmosphere 1010.0 30 < th dose independent rect. 19 11
284 181.36 radiation 1.0 90 < th dose dependent rect. 3 4
290 181.38 radiation 10.0 720 < th dose independent rect. 9 12
294 181.41 radiation 1.0 90 < th dose independent sin 0 NA
315 181.48 radiation 10.0 720 < th dose independent sin 16 NA
324 181.59 temperature 20.0 30 > th dose independent rect. 3 3
329 181.64 wind 9.0 30 < th dose independent rect. 6 21
352 181.81 radiation 10.0 720 < th dose dependent rect. 13 8
356 181.83 wind 9.0 270 < th dose independent rect. 5 11
359 181.86 humidity 50.0 720 > th dose independent rect. 17 4
366 181.90 humidity 80.0 30 > th dose independent rect. 3 3
370 181.93 humidity 70.0 30 > th dose independent rect. 16 14
382 182.00 atmosphere 1010.0 270 < th dose independent rect. 16 13
388 182.02 wind 9.0 30 < th dose independent rect. 3 3
389 182.02 temperature 10.0 30 > th dose independent rect. 3 3
391 182.02 temperature 30.0 30 < th dose independent rect. 3 3
392 182.02 humidity 50.0 30 > th dose independent rect. 3 3
395 182.02 atmosphere 995.0 30 > th dose independent rect. 3 3
396 182.02 atmosphere 1010.0 30 < th dose independent rect. 3 3
398 182.02 radiation 20.0 30 < th dose independent rect. 3 3
402 182.02 temperature 10.0 30 > th dose independent rect. 6 21
405 182.03 radiation 40.0 30 < th dose dependent rect. 3 3
408 182.05 precipitation 0.1 270 < th dose independent rect. 5 11
411 182.05 precipitation 0.1 270 < th dose dependent rect. 5 11
418 182.11 temperature 15.0 720 > th dose independent rect. 17 4
433 182.17 humidity 50.0 30 > th dose dependent rect. 3 3
452 182.20 radiation 30.0 720 < th dose dependent rect. 16 5
468 182.27 precipitation 0.1 30 < th dose independent rect. 3 3
470 182.27 precipitation 0.1 30 < th dose dependent rect. 3 3
473 182.28 temperature 30.0 30 < th dose dependent rect. 23 4
481 182.32 atmosphere 1015.0 720 < th dose independent rect. 17 4
484 182.33 wind 9.0 30 < th dose dependent rect. 3 3
498 182.34 temperature 30.0 270 < th dose independent rect. 16 13
510 182.37 temperature 10.0 270 > th dose independent rect. 5 11
511 182.37 atmosphere 1015.0 270 < th dose independent rect. 5 11
517 182.38 atmosphere 995.0 270 > th dose independent rect. 16 13
525 182.41 humidity 90.0 720 < th dose dependent rect. 15 1
529 182.42 humidity 50.0 10 > th dose dependent rect. 12 11
549 182.51 wind 9.0 270 < th dose independent rect. 16 13
550 182.51 humidity 50.0 270 > th dose dependent rect. 24 21
554 182.53 humidity 50.0 270 > th dose independent rect. 24 21
557 182.54 temperature 10.0 30 > th dose dependent rect. 6 13
573 182.61 radiation 1.0 90 > th dose independent rect. 6 13
595 182.66 wind 5.0 10 < th dose independent rect. 23 4
615 182.74 humidity 80.0 30 > th dose independent rect. 14 16
618 182.75 humidity 70.0 30 > th dose independent rect. 19 11
621 182.77 wind 9.0 1440 < th dose independent rect. 4 3
622 182.77 temperature 10.0 1440 > th dose independent rect. 4 3
625 182.77 temperature 30.0 1440 < th dose independent rect. 4 3
629 182.77 humidity 50.0 1440 > th dose independent rect. 4 3
634 182.77 atmosphere 995.0 1440 > th dose independent rect. 4 3
635 182.77 atmosphere 1015.0 1440 < th dose independent rect. 4 3
636 182.77 radiation 40.0 1440 < th dose independent rect. 4 3
642 182.77 temperature 10.0 1440 > th dose independent rect. 7 21
651 182.79 wind 9.0 720 < th dose independent rect. 21 20
653 182.80 wind 1.0 90 > th dose independent rect. 5 22
712 183.05 humidity 90.0 90 < th dose independent rect. 22 21
747 183.17 temperature 30.0 270 < th dose dependent rect. 23 1
781 183.34 humidity 80.0 30 > th dose independent rect. 3 20
787 183.36 atmosphere 1015.0 90 < th dose dependent rect. 3 2
824 183.50 temperature 10.0 1440 > th dose independent rect. 20 11
827 183.50 temperature 30.0 1440 < th dose independent rect. 20 11
831 183.50 humidity 50.0 1440 > th dose independent rect. 20 11
836 183.50 atmosphere 995.0 1440 > th dose independent rect. 20 11
837 183.50 radiation 40.0 1440 < th dose independent rect. 20 11
841 183.50 temperature 10.0 1440 > th dose independent rect. 7 13
845 183.50 humidity 50.0 90 > th dose dependent rect. 24 23
856 183.54 radiation 1.0 90 > th dose independent rect. 17 23
912 183.71 temperature 10.0 720 > th dose independent rect. 21 20
920 183.72 temperature 30.0 30 < th dose independent rect. 16 14
928 183.75 temperature 10.0 30 > th dose independent rect. 23 4
929 183.75 temperature 30.0 30 < th dose independent rect. 23 4
930 183.75 humidity 50.0 30 > th dose independent rect. 23 4
933 183.75 atmosphere 995.0 30 > th dose independent rect. 23 4
934 183.75 radiation 1.0 30 < th dose independent rect. 23 4
939 183.75 temperature 10.0 30 > th dose independent rect. 3 20
941 183.75 atmosphere 995.0 30 > th dose independent rect. 3 20
942 183.75 atmosphere 1015.0 30 < th dose independent rect. 3 20
943 183.75 radiation 1.0 30 < th dose dependent rect. 23 4
958 183.79 wind 9.0 1440 < th dose independent rect. 24 4
966 183.80 radiation 10.0 90 < th dose dependent rect. 13 23
984 183.86 wind 7.0 270 < th dose independent rect. 20 13
989 183.88 precipitation 0.1 30 < th dose independent rect. 23 4
992 183.88 precipitation 0.1 30 < th dose dependent rect. 23 4