BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0515600 Os12g0515600|AK071160
(382 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G41880.1 | chr2:17475088-17477076 FORWARD LENGTH=388 406 e-113
AT3G57550.2 | chr3:21307269-21309193 FORWARD LENGTH=391 402 e-112
AT3G06200.1 | chr3:1877678-1878526 FORWARD LENGTH=283 93 3e-19
>AT2G41880.1 | chr2:17475088-17477076 FORWARD LENGTH=388
Length = 387
Score = 406 bits (1043), Expect = e-113, Method: Compositional matrix adjust.
Identities = 204/359 (56%), Positives = 259/359 (72%), Gaps = 8/359 (2%)
Query: 25 IDIGDKTYVISRSDDPKS-SITIKILDKLTQTWVVPTVLGAPPNPTSSHSAVLVNNEKIL 83
+D+GD+ ++I + + + SI ++I DK++ W P VLG P P+ +SA ++ +IL
Sbjct: 33 VDVGDRIFLIGGTHERNNFSIGVQIYDKISNNWFSPIVLGTGPKPSKGYSAFVLEQGRIL 92
Query: 84 IIEKGVPLNDSIWFLEVDTPFVKQQSKIKGTVVVAWSKGVIGEGQKPIVISGPSGVGKGT 143
+I+KG P NDSIWFLEVD+P+V++Q K+ VVAWSKGV G +KPIVISGPSGVGKGT
Sbjct: 93 VIKKGSPRNDSIWFLEVDSPYVREQKKLLRKEVVAWSKGVRGNAEKPIVISGPSGVGKGT 152
Query: 144 LIAKLMKEYPSKFGFSVSHTTRAPREKEIDGVHYHFTERSKIEEEISEGKFLEFAHVHGN 203
LI+ LMKE+PS FGFSVSHTTR+PR E+DGVHYHF ++ +E+EI +GKFLEFA VHGN
Sbjct: 153 LISMLMKEFPSMFGFSVSHTTRSPRSMEMDGVHYHFADKKVMEKEIKDGKFLEFASVHGN 212
Query: 204 VYGTSVEAVESVTDEGKRCILDIDVQGARSVRASSLEAIFIFVCPPSFEELEKRLRARGT 263
+YGTS+E+VE+VTD GKRCILDIDVQGARSVRASSL+AIFIFVCPPS +ELE RLRARGT
Sbjct: 213 LYGTSIESVEAVTDSGKRCILDIDVQGARSVRASSLDAIFIFVCPPSMKELEDRLRARGT 272
Query: 264 ETEEQIQKRLRNARAELDQSNSPGLFDHLLVNDDLEACYENLKKLLSLDDDHEDSNDSFI 323
ETEEQIQKRLRNA AE+ + S G+F +L ND+LE CY+ LK LL LD +
Sbjct: 273 ETEEQIQKRLRNAEAEIKEGISSGIFGLILYNDNLEECYKKLKNLLGLDGLAHVNGVEI- 331
Query: 324 KDGKETACYSILSKTNSEILLQSETNEAEKGTTNXXXX-XXXXXGGAPGRTRGLKISPV 381
+G +SK +I++Q E K T N GGAPGRTRG+ + +
Sbjct: 332 -EGINLPIEYAVSKMEDKIIIQ----ETGKETRNKIVVDISSLNGGAPGRTRGILVDAI 385
>AT3G57550.2 | chr3:21307269-21309193 FORWARD LENGTH=391
Length = 390
Score = 402 bits (1034), Expect = e-112, Method: Compositional matrix adjust.
Identities = 206/359 (57%), Positives = 261/359 (72%), Gaps = 4/359 (1%)
Query: 24 AIDIGDKTYVISRSDDPKS-SITIKILDKLTQTWVVPTVLGAPPNPTSSHSAVLVNNEKI 82
++ IGD+++VI + + + ++I DK+T W P+VLG P P +SA+++ +I
Sbjct: 32 SVLIGDRSFVIGGNHEGNPLFLGVQIHDKVTNKWSSPSVLGTGPKPCKGYSAIVLPKGRI 91
Query: 83 LIIEKGVPLNDSIWFLEVDTPFVKQQSKIKGTVVVAWSKGVIGEGQKPIVISGPSGVGKG 142
L+I+KG +DSIWFLEVDTPF+++Q K+ G VVAWSKGV G +KPIVISGPSGVGKG
Sbjct: 92 LVIKKGSASDDSIWFLEVDTPFIREQKKLLGREVVAWSKGVRGNAEKPIVISGPSGVGKG 151
Query: 143 TLIAKLMKEYPSKFGFSVSHTTRAPREKEIDGVHYHFTERSKIEEEISEGKFLEFAHVHG 202
TLI+ LMKE+PS FGFSVSHTTRAPR E +GVHYHFT+++ +E+EI +GKFLEFA VHG
Sbjct: 152 TLISMLMKEFPSMFGFSVSHTTRAPRCMEKNGVHYHFTDKTVMEKEIKDGKFLEFASVHG 211
Query: 203 NVYGTSVEAVESVTDEGKRCILDIDVQGARSVRASSLEAIFIFVCPPSFEELEKRLRARG 262
N+YGTS+E+VE VTD GKRCILDIDVQGARSV+ASSL+AIFIFVCPPS +ELE RLRARG
Sbjct: 212 NLYGTSIESVEVVTDSGKRCILDIDVQGARSVKASSLDAIFIFVCPPSMKELEDRLRARG 271
Query: 263 TETEEQIQKRLRNARAELDQSNSPGLFDHLLVNDDLEACYENLKKLLSLDDDHEDSNDSF 322
TETEEQIQKRLRNA AE+ S G+F+H L ND+LE CY+ LK LL + +D N
Sbjct: 272 TETEEQIQKRLRNADAEIKAGKSSGIFEHKLYNDNLEECYKTLKNLLGI-NDLAPVNGVE 330
Query: 323 IKDGKETACYSILSKTNSEILLQSETNEAEKGTTNXXXXXXXXXGGAPGRTRGLKISPV 381
+G ++K + +IL+Q ET E K GGAPGRTRG+ + V
Sbjct: 331 AVEGINLPKEHTVTKMDDKILIQ-ETGEGTKNKM-IVLDLSSINGGAPGRTRGIVLDTV 387
>AT3G06200.1 | chr3:1877678-1878526 FORWARD LENGTH=283
Length = 282
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 93/166 (56%), Gaps = 5/166 (3%)
Query: 131 IVISGPSGVGKGTLIAKLMKEYPSKFGFSVSHTTRAPREKEIDGVHYHFTERSKIEEEIS 190
IVISGPSGVGK +I KL +E F V+ T+R R E+DG Y F R + +
Sbjct: 91 IVISGPSGVGKDAVINKL-REVREGLHFVVTATSRPMRPGEVDGKDYFFVSRDQFLSMVE 149
Query: 191 EGKFLEFAHVHGNVYGTSVEAVESVTDEGKRCILDIDVQGARSV-RASSLEAIFIFVCPP 249
+ LE+A V+G G + ++ +G+ +L +D+QGA+++ R A+FIF+
Sbjct: 150 NEELLEYALVYGEYKGIPKKQIQEFMAKGEDIVLRVDIQGAQTLRRILGNSAVFIFLVAE 209
Query: 250 SFEELEKRLRARGTETEEQIQKRLRNARAELDQSNSPGLFDHLLVN 295
S + +RL R TE++E++ R+ AR E+ + FD+++VN
Sbjct: 210 SELAMVERLIDRKTESQEELLVRVATAREEVRHLKN---FDYVVVN 252
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.312 0.132 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,377,712
Number of extensions: 363583
Number of successful extensions: 1320
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1317
Number of HSP's successfully gapped: 3
Length of query: 382
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 282
Effective length of database: 8,364,969
Effective search space: 2358921258
Effective search space used: 2358921258
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 112 (47.8 bits)