Os12g0508200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os12g0508200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 153.54 | 0.582 | 7.85 | -1.84 | 1.11 | 1.62 | 0.727 | -4.03 | -0.308 | 8.28 | 17.03 | 1172 | -- | -- |
| 161.99 | 0.593 | 7.75 | -1.24 | 1.03 | 1.8 | 0.979 | -- | -0.125 | 7.98 | 1.605 | 5620 | -- | -- |
| 154.48 | 0.579 | 7.84 | -1.79 | 1.18 | 1.7 | -- | -4.14 | -0.288 | 8.3 | 16.5 | 1073 | -- | -- |
| 164.61 | 0.598 | 7.75 | -1.21 | 1.03 | 1.78 | -- | -- | -0.128 | 7.73 | 2.915 | 5706 | -- | -- |
| 214.98 | 0.683 | 7.87 | -1.81 | -- | 1.58 | -- | -3.81 | -0.294 | -- | 16.72 | 1395 | -- | -- |
| 215.58 | 0.688 | 7.66 | -0.374 | 1.05 | -- | 0.834 | -- | 0.256 | 7.65 | -- | -- | -- | -- |
| 217.42 | 0.691 | 7.66 | -0.355 | 1.05 | -- | -- | -- | 0.254 | 7.49 | -- | -- | -- | -- |
| 222.08 | 0.694 | 7.77 | -1.21 | -- | 1.8 | -- | -- | -0.122 | -- | -6.068 | 5747 | -- | -- |
| 187.12 | 0.637 | 7.69 | -- | 1.37 | 1.52 | -- | -- | 0.0984 | 7.88 | 14.2 | 757 | -- | -- |
| 276.67 | 0.777 | 7.69 | -0.339 | -- | -- | -- | -- | 0.27 | -- | -- | -- | -- | -- |
| 220.74 | 0.695 | 7.65 | -- | 1.05 | -- | -- | -- | 0.293 | 7.51 | -- | -- | -- | -- |
| 245.26 | 0.729 | 7.72 | -- | -- | 1.32 | -- | -- | 0.111 | -- | 14.2 | 1408 | -- | -- |
| 279.7 | 0.781 | 7.68 | -- | -- | -- | -- | -- | 0.308 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 150.15 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 3 | 150.43 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 12 |
| 4 | 150.47 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 14 | 150.50 | temperature | 20 | 1440 | > th | dose dependent | rect. | 14 | 8 |
| 21 | 151.04 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 4 |
| 39 | 151.47 | temperature | 15 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 52 | 151.69 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 92 | 151.98 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 4 |
| 129 | 152.16 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 133 | 152.19 | temperature | 20 | 1440 | > th | dose dependent | sin | 16 | NA |
| 174 | 152.46 | humidity | 90 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 202 | 152.64 | temperature | 30 | 1440 | < th | dose dependent | rect. | 14 | 8 |
| 209 | 152.69 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 223 | 152.74 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 6 |
| 250 | 152.86 | radiation | 1 | 14400 | < th | dose independent | rect. | 17 | 20 |
| 302 | 153.07 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 22 |
| 313 | 153.13 | radiation | 1 | 14400 | < th | dose independent | sin | 11 | NA |
| 327 | 153.19 | radiation | 1 | 14400 | > th | dose independent | sin | 12 | NA |
| 360 | 153.33 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 14 |
| 417 | 153.59 | temperature | 30 | 1440 | < th | dose dependent | sin | 16 | NA |
| 434 | 153.65 | radiation | 1 | 14400 | < th | dose dependent | sin | 12 | NA |
| 440 | 153.67 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 17 |
| 460 | 153.73 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 2 |
| 465 | 153.75 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 6 |
| 500 | 153.90 | radiation | 1 | 14400 | < th | dose dependent | rect. | 16 | 4 |
| 513 | 153.92 | radiation | 1 | 14400 | < th | dose dependent | rect. | 16 | 8 |
| 517 | 153.93 | radiation | 1 | 14400 | < th | dose dependent | rect. | 16 | 12 |
| 521 | 153.95 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 8 |
| 537 | 154.00 | radiation | 1 | 14400 | < th | dose dependent | rect. | 3 | 4 |
| 545 | 154.01 | radiation | 1 | 14400 | < th | dose dependent | rect. | 23 | 8 |
| 605 | 154.12 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 14 |
| 608 | 154.12 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 19 |
| 610 | 154.12 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 23 |
| 627 | 154.15 | humidity | 90 | 43200 | > th | dose independent | rect. | 5 | 5 |
| 639 | 154.18 | radiation | 1 | 14400 | < th | dose independent | rect. | 2 | 17 |
| 645 | 154.18 | radiation | 1 | 14400 | < th | dose independent | rect. | 23 | 20 |
| 651 | 154.19 | radiation | 1 | 14400 | < th | dose independent | no | NA | NA |
| 676 | 154.20 | humidity | 90 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 700 | 154.22 | radiation | 1 | 14400 | < th | dose independent | rect. | 7 | 23 |
| 708 | 154.23 | radiation | 1 | 14400 | < th | dose independent | rect. | 9 | 23 |
| 735 | 154.27 | humidity | 90 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 745 | 154.27 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 15 |
| 758 | 154.30 | humidity | 90 | 43200 | < th | dose independent | rect. | 6 | 4 |
| 759 | 154.30 | humidity | 90 | 43200 | > th | dose independent | rect. | 5 | 8 |
| 779 | 154.31 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 14 |
| 793 | 154.31 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 4 |
| 799 | 154.32 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 17 |
| 801 | 154.33 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 6 |
| 810 | 154.35 | humidity | 90 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 818 | 154.36 | radiation | 1 | 14400 | < th | dose dependent | rect. | 9 | 23 |
| 819 | 154.37 | humidity | 90 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 826 | 154.38 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 14 |
| 830 | 154.38 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 19 |
| 842 | 154.39 | radiation | 1 | 14400 | < th | dose dependent | rect. | 3 | 17 |
| 846 | 154.39 | temperature | 10 | 720 | > th | dose dependent | rect. | 8 | 23 |
| 847 | 154.39 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 23 |
| 853 | 154.40 | humidity | 90 | 43200 | > th | dose dependent | rect. | 5 | 8 |
| 873 | 154.40 | radiation | 1 | 14400 | < th | dose dependent | rect. | 7 | 23 |
| 874 | 154.41 | radiation | 1 | 14400 | > th | dose independent | no | NA | NA |
| 875 | 154.41 | temperature | 20 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 933 | 154.41 | radiation | 1 | 14400 | < th | dose dependent | rect. | 23 | 20 |
| 938 | 154.41 | radiation | 1 | 14400 | < th | dose dependent | rect. | 21 | 22 |
| 943 | 154.42 | radiation | 1 | 14400 | < th | dose dependent | no | NA | NA |
| 958 | 154.43 | radiation | 1 | 14400 | > th | dose independent | rect. | 7 | 23 |
| 966 | 154.45 | radiation | 1 | 14400 | > th | dose independent | rect. | 10 | 23 |
| 985 | 154.48 | radiation | 1 | 14400 | < th | dose independent | rect. | 7 | 13 |
| 994 | 154.49 | radiation | 1 | 14400 | < th | dose independent | rect. | 7 | 17 |