BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0508200 Os12g0508200|AK069349
         (155 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G67390.1  | chr5:26887883-26888512 REVERSE LENGTH=177           51   2e-07

>AT5G67390.1 | chr5:26887883-26888512 REVERSE LENGTH=177
          Length = 176

 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 54/90 (60%), Gaps = 4/90 (4%)

Query: 2  EKEHIKMAILKQEQTFRQQVNELHRVYRVQKQLM--IEMQSISTQAQ--AKADNRTIPRL 57
          +K+ +KMA+LK E+TF+QQV ELHR+Y+VQK LM  +E+   +T+           I R+
Sbjct: 9  DKQCMKMAMLKHEETFKQQVYELHRLYQVQKILMKNMEINKFTTKNNHVNSGLGTFIRRV 68

Query: 58 EMDHQQWYRNSGEKKAPEFVEDFDLELTLA 87
          + +  +    SG     E +++ ++ELTL 
Sbjct: 69 DNEIDRPANFSGGNNNIEIMDESEIELTLG 98



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.128    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,668,009
Number of extensions: 80073
Number of successful extensions: 229
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 229
Number of HSP's successfully gapped: 2
Length of query: 155
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 65
Effective length of database: 8,639,129
Effective search space: 561543385
Effective search space used: 561543385
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 107 (45.8 bits)