Os12g0482500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os12g0482500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 53.24 | 0.343 | 9.6 | 0.31 | 0.185 | -0.69 | 0.31 | 0.932 | 0.159 | 0.603 | 24.15 | 1307 | -- | -- |
| 54.51 | 0.344 | 9.57 | 0.644 | 0.18 | -0.607 | 0.23 | -- | 0.251 | 0.366 | 23.91 | 1246 | -- | -- |
| 53.62 | 0.341 | 9.6 | 0.315 | 0.194 | -0.691 | -- | 0.88 | 0.164 | 0.682 | 24.18 | 1339 | -- | -- |
| 54.67 | 0.344 | 9.57 | 0.629 | 0.178 | -0.612 | -- | -- | 0.247 | 0.988 | 23.9 | 1244 | -- | -- |
| 55.28 | 0.346 | 9.6 | 0.311 | -- | -0.693 | -- | 0.854 | 0.162 | -- | 24.2 | 1185 | -- | -- |
| 71.03 | 0.395 | 9.51 | 0.883 | 0.264 | -- | 0.261 | -- | 0.505 | 1.24 | -- | -- | -- | -- |
| 71.31 | 0.395 | 9.51 | 0.874 | 0.264 | -- | -- | -- | 0.504 | 1.32 | -- | -- | -- | -- |
| 56.3 | 0.349 | 9.57 | 0.63 | -- | -0.632 | -- | -- | 0.241 | -- | 23.92 | 1116 | -- | -- |
| 64.64 | 0.374 | 9.58 | -- | 0.243 | -0.667 | -- | -- | 0.205 | 1.6 | 23 | 1849 | -- | -- |
| 75.61 | 0.406 | 9.51 | 0.884 | -- | -- | -- | -- | 0.509 | -- | -- | -- | -- | -- |
| 91.43 | 0.447 | 9.53 | -- | 0.28 | -- | -- | -- | 0.406 | 1.43 | -- | -- | -- | -- |
| 63.08 | 0.37 | 9.59 | -- | -- | -0.964 | -- | -- | 0.136 | -- | 21.6 | 6777 | -- | -- |
| 96.24 | 0.458 | 9.53 | -- | -- | -- | -- | -- | 0.411 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 50.79 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 19 |
| 28 | 51.66 | temperature | 15 | 270 | > th | dose dependent | rect. | 11 | 22 |
| 43 | 51.96 | temperature | 20 | 720 | > th | dose dependent | sin | 11 | NA |
| 61 | 52.21 | temperature | 20 | 1440 | > th | dose dependent | rect. | 14 | 15 |
| 64 | 52.27 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 12 |
| 76 | 52.33 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 2 |
| 85 | 52.35 | temperature | 10 | 720 | > th | dose dependent | sin | 13 | NA |
| 104 | 52.41 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 17 |
| 127 | 52.48 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 15 |
| 153 | 52.59 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 305 | 52.95 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 326 | 53.00 | temperature | 30 | 720 | < th | dose dependent | sin | 12 | NA |
| 337 | 53.02 | temperature | 30 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 364 | 53.06 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 372 | 53.08 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 378 | 53.09 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 6 |
| 398 | 53.13 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 9 |
| 409 | 53.16 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 21 |
| 454 | 53.29 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 6 |
| 581 | 53.47 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 23 |
| 620 | 53.51 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 23 |
| 650 | 53.55 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 23 |
| 714 | 53.62 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 719 | 53.62 | temperature | 25 | 1440 | > th | dose dependent | rect. | 23 | 21 |
| 748 | 53.64 | temperature | 25 | 1440 | > th | dose dependent | rect. | 21 | 23 |
| 767 | 53.66 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 814 | 53.68 | temperature | 25 | 1440 | > th | dose dependent | rect. | 4 | 16 |
| 980 | 53.81 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 21 |
| 990 | 53.83 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 1 |