BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0482500 Os12g0482500|AK120590
         (424 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os12g0482500  Conserved hypothetical protein                      572   e-163

>Os12g0482500 Conserved hypothetical protein
          Length = 424

 Score =  572 bits (1473), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 316/424 (74%), Positives = 316/424 (74%)

Query: 1   MVRELIAVVXXXXXXXXXXXXXXXXXXXFCLIAAAASWLRLGPPLCLLCAGVHRLLCSXX 60
           MVRELIAVV                   FCLIAAAASWLRLGPPLCLLCAGVHRLLCS  
Sbjct: 1   MVRELIAVVARAALQWALSSLLLANGAAFCLIAAAASWLRLGPPLCLLCAGVHRLLCSAP 60

Query: 61  XXXXXXXXRGQERAAFRRLLCDAHVAAMAASEPEXXXXXXXXXXXXMISASDGEEKRDAA 120
                   RGQERAAFRRLLCDAHVAAMAASEPE            MISASDGEEKRDAA
Sbjct: 61  AAADADDARGQERAAFRRLLCDAHVAAMAASEPEKKKQQQQPDQQKMISASDGEEKRDAA 120

Query: 121 EVEIADKPGGMEGHRVVSIGSEICEQDHAGGDQRSTAGEEGYGDGPYVSLFELAPIAARA 180
           EVEIADKPGGMEGHRVVSIGSEICEQDHAGGDQRSTAGEEGYGDGPYVSLFELAPIAARA
Sbjct: 121 EVEIADKPGGMEGHRVVSIGSEICEQDHAGGDQRSTAGEEGYGDGPYVSLFELAPIAARA 180

Query: 181 PQDEDGHGNAHEVFDDLPAELRRDGDGALTVGXXXXXXXXXXXELDAVRAELDGERRACA 240
           PQDEDGHGNAHEVFDDLPAELRRDGDGALTVG           ELDAVRAELDGERRACA
Sbjct: 181 PQDEDGHGNAHEVFDDLPAELRRDGDGALTVGRLAAALRAQRRELDAVRAELDGERRACA 240

Query: 241 EAAEYQRQLEEQGEFDREAVRLAMQLVHEAETEKHALQRQLDAFRVKAHLYDYEXXXXXX 300
           EAAEYQRQLEEQGEFDREAVRLAMQLVHEAETEKHALQRQLDAFRVKAHLYDYE      
Sbjct: 241 EAAEYQRQLEEQGEFDREAVRLAMQLVHEAETEKHALQRQLDAFRVKAHLYDYEAAATAA 300

Query: 301 XXXXXXXXXXXXXXNNYQSLVDFLPGSVFSSSPDLANLLKLYTEGNGGGRRLTDAPVPVV 360
                         NNYQSLVDFLPGSVFSSSPDLANLLKLYTEGNGGGRRLTDAPVPVV
Sbjct: 301 AATDHDAAGDGGGGNNYQSLVDFLPGSVFSSSPDLANLLKLYTEGNGGGRRLTDAPVPVV 360

Query: 361 TXXXXXXXXXXXXXXXXXXXXXAVAAIGGVDSXXXXXXXXXXXXXXXSLQEGSSDHLEPT 420
           T                     AVAAIGGVDS               SLQEGSSDHLEPT
Sbjct: 361 TEVVEEEEEEEEEEEEEEEEEVAVAAIGGVDSNGNGDAAATIAIAGDSLQEGSSDHLEPT 420

Query: 421 NGEL 424
           NGEL
Sbjct: 421 NGEL 424



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.134    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,122,582
Number of extensions: 471603
Number of successful extensions: 1382
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1380
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 320
Effective length of database: 11,605,545
Effective search space: 3713774400
Effective search space used: 3713774400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 157 (65.1 bits)