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Os12g0446700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF1649 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.9 (0.0177) R2 : 0.0333
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.148 (0.0373) R2dN8 : 0.0431 R2N8 : 0.0333
σ : 0.333
deviance : 51.05
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
30.33 0.259 11 -0.25 0.0443 0.598 0.136 -0.114 0.13 20.6 44.49 15 -- --
30.34 0.257 11 -0.25 0.0476 0.612 0.0645 -- 0.133 19.3 45.58 15 -- --
30.34 0.257 11 -0.25 0.0486 0.626 -- -0.0233 0.13 18.3 45.41 15 -- --
30.34 0.257 11 -0.249 0.046 0.63 -- -- 0.131 18 45.5 15 -- --
30.45 0.257 11 -0.247 -- 0.628 -- -0.0236 0.13 -- 45.49 15 -- --
36.99 0.285 11 -0.264 0.442 -- 0.112 -- 0.114 23.8 -- -- -- --
37.04 0.285 11 -0.269 0.442 -- -- -- 0.114 23.8 -- -- -- --
30.45 0.257 11 -0.25 -- 0.628 -- -- 0.13 -- 45.49 15 -- --
31.97 0.263 10.9 -- 0.0524 0.641 -- -- 0.16 16.9 44.82 15 -- --
49.32 0.328 11 -0.256 -- -- -- -- 0.119 -- -- -- -- --
38.95 0.292 11 -- 0.439 -- -- -- 0.144 23.8 -- -- -- --
32.1 0.264 10.9 -- -- 0.628 -- -- 0.158 -- 45.15 15 -- --
51.05 0.333 10.9 -- -- -- -- -- 0.148 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 29.28 temperature 20 14400 < th dose independent rect. 20 2
4 29.41 temperature 20 14400 > th dose independent rect. 21 1
5 29.41 temperature 20 14400 > th dose independent rect. 20 3
11 29.45 temperature 20 14400 < th dose independent rect. 19 6
24 29.56 humidity 90 14400 > th dose independent rect. 21 1
68 29.86 humidity 80 14400 > th dose independent rect. 14 1
82 29.93 wind 1 43200 > th dose independent rect. 2 1
89 29.94 wind 9 43200 < th dose independent rect. 20 19
96 29.97 humidity 90 14400 > th dose dependent rect. 12 17
113 30.02 temperature 20 14400 > th dose independent sin 15 NA
115 30.02 wind 9 43200 > th dose independent rect. 20 19
134 30.07 temperature 20 14400 < th dose independent sin 15 NA
136 30.07 wind 9 43200 < th dose independent rect. 4 11
142 30.08 wind 9 43200 < th dose independent rect. 8 6
161 30.10 wind 9 43200 < th dose independent rect. 24 15
180 30.12 wind 9 43200 > th dose independent rect. 17 22
183 30.13 wind 1 43200 < th dose independent rect. 2 1
191 30.13 humidity 80 43200 > th dose dependent rect. 12 1
194 30.14 humidity 80 14400 < th dose independent rect. 13 2
216 30.16 wind 9 43200 < th dose independent rect. 10 2
217 30.16 wind 9 43200 > th dose independent rect. 4 11
221 30.16 humidity 90 14400 > th dose dependent sin 14 NA
228 30.17 wind 7 43200 > th dose dependent rect. 10 3
229 30.17 wind 7 43200 > th dose dependent rect. 9 5
230 30.17 wind 9 43200 > th dose dependent rect. 10 20
232 30.18 wind 9 43200 > th dose independent rect. 10 2
238 30.18 radiation 40 10 < th dose dependent sin 2 NA
256 30.19 wind 7 43200 > th dose dependent rect. 19 19
262 30.20 wind 9 43200 > th dose independent rect. 7 8
287 30.21 wind 9 43200 > th dose dependent rect. 10 14
293 30.21 humidity 90 14400 > th dose dependent rect. 7 22
317 30.23 wind 9 43200 > th dose dependent rect. 10 8
326 30.24 humidity 90 14400 < th dose independent rect. 21 1
336 30.24 temperature 20 14400 > th dose independent rect. 7 19
339 30.24 wind 9 43200 > th dose dependent rect. 10 11
343 30.25 wind 9 43200 < th dose independent sin 3 NA
359 30.25 humidity 90 14400 > th dose dependent rect. 20 21
361 30.25 radiation 40 10 < th dose dependent rect. 17 23
377 30.27 temperature 20 1440 > th dose independent rect. 20 5
384 30.27 wind 7 43200 > th dose dependent rect. 5 9
420 30.29 temperature 20 14400 > th dose independent rect. 18 15
451 30.31 temperature 20 1440 < th dose independent rect. 20 5
485 30.32 humidity 90 14400 > th dose dependent no NA NA
496 30.32 humidity 90 14400 > th dose dependent rect. 15 23
500 30.32 humidity 90 14400 > th dose dependent rect. 23 23
510 30.33 temperature 20 14400 < th dose independent rect. 7 19
511 30.33 humidity 80 14400 > th dose dependent rect. 14 1
526 30.34 wind 9 43200 > th dose independent sin 3 NA
527 30.34 temperature 20 1440 > th dose independent rect. 21 2
529 30.34 temperature 20 14400 < th dose independent rect. 18 15
534 30.34 wind 9 43200 > th dose dependent sin 19 NA
566 30.35 humidity 90 14400 > th dose dependent rect. 21 4
580 30.35 radiation 40 10 < th dose dependent rect. 13 23
581 30.36 radiation 30 4320 < th dose independent rect. 7 1
600 30.36 wind 9 43200 < th dose independent rect. 12 23
601 30.36 temperature 30 14400 < th dose dependent rect. 13 1
625 30.37 humidity 90 14400 > th dose independent rect. 18 7
641 30.37 wind 1 43200 > th dose dependent rect. 5 1
647 30.37 humidity 90 14400 > th dose dependent rect. 2 23
649 30.38 temperature 20 1440 < th dose independent rect. 21 2
653 30.38 humidity 90 14400 > th dose independent rect. 17 11
698 30.39 wind 9 43200 > th dose independent rect. 12 23
699 30.39 wind 9 43200 > th dose independent rect. 14 23
700 30.39 wind 9 43200 < th dose independent rect. 4 23
701 30.39 wind 9 43200 < th dose independent rect. 22 23
703 30.39 wind 1 43200 > th dose dependent rect. 5 3
713 30.40 wind 9 43200 < th dose independent no NA NA
724 30.40 wind 9 43200 > th dose independent rect. 4 20
726 30.40 wind 9 43200 < th dose independent rect. 4 20
733 30.40 wind 9 43200 < th dose independent rect. 2 22
738 30.40 wind 9 43200 > th dose independent rect. 22 23
744 30.40 wind 7 43200 > th dose dependent sin 3 NA
745 30.40 wind 9 43200 < th dose dependent rect. 5 1
746 30.40 wind 9 43200 < th dose dependent rect. 5 3
750 30.40 atmosphere 995 43200 < th dose dependent rect. 10 16
754 30.41 wind 9 43200 > th dose independent no NA NA
823 30.42 humidity 90 14400 > th dose dependent sin 5 NA
900 30.45 wind 9 43200 > th dose independent rect. 4 17
904 30.45 wind 9 43200 > th dose independent rect. 2 19
937 30.46 humidity 90 14400 > th dose independent rect. 23 1
949 30.46 wind 9 43200 < th dose independent rect. 2 19
973 30.46 humidity 90 14400 > th dose dependent rect. 3 7
988 30.47 wind 9 43200 < th dose independent rect. 4 17