BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0446700 Os12g0446700|AK071147
         (189 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os12g0446700  Protein of unknown function DUF1649 family pro...   390   e-109
Os12g0428400  Protein of unknown function DUF1649 family pro...   244   3e-65

>Os12g0446700 Protein of unknown function DUF1649 family protein
          Length = 189

 Score =  390 bits (1002), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 189/189 (100%), Positives = 189/189 (100%)

Query: 1   MNCETCQLKELELEQDEIKDVLRCILHTIFFHRTLTLVRPKDVDCDLFEITYVQCGLPDL 60
           MNCETCQLKELELEQDEIKDVLRCILHTIFFHRTLTLVRPKDVDCDLFEITYVQCGLPDL
Sbjct: 1   MNCETCQLKELELEQDEIKDVLRCILHTIFFHRTLTLVRPKDVDCDLFEITYVQCGLPDL 60

Query: 61  EKEVDEKINQFIAWVEKHPNRRSQVCLSFFDEKNKNPSWFTSKTERIYWEQWFINLHVIS 120
           EKEVDEKINQFIAWVEKHPNRRSQVCLSFFDEKNKNPSWFTSKTERIYWEQWFINLHVIS
Sbjct: 61  EKEVDEKINQFIAWVEKHPNRRSQVCLSFFDEKNKNPSWFTSKTERIYWEQWFINLHVIS 120

Query: 121 PKGHGKSRSSKASTSIRGKALEEASSKRAALGLLIQEVLFQIINFANEKKDHIPPISDRI 180
           PKGHGKSRSSKASTSIRGKALEEASSKRAALGLLIQEVLFQIINFANEKKDHIPPISDRI
Sbjct: 121 PKGHGKSRSSKASTSIRGKALEEASSKRAALGLLIQEVLFQIINFANEKKDHIPPISDRI 180

Query: 181 FNHEISIPR 189
           FNHEISIPR
Sbjct: 181 FNHEISIPR 189



>Os12g0428400 Protein of unknown function DUF1649 family protein
          Length = 191

 Score =  244 bits (622), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 118/137 (86%), Positives = 125/137 (91%)

Query: 53  VQCGLPDLEKEVDEKINQFIAWVEKHPNRRSQVCLSFFDEKNKNPSWFTSKTERIYWEQW 112
           VQCGLP+LEKEVDEKINQF+AWVEKHPNR SQVCLSFFDEKNK PSWF +KTERIYWEQW
Sbjct: 37  VQCGLPELEKEVDEKINQFVAWVEKHPNRSSQVCLSFFDEKNKLPSWFGNKTERIYWEQW 96

Query: 113 FINLHVISPKGHGKSRSSKASTSIRGKALEEASSKRAALGLLIQEVLFQIINFANEKKDH 172
           FINLHVISPK HGKS SSKA T+I G+ALEE+SS+RAAL   I EVLFQIINFANEKKDH
Sbjct: 97  FINLHVISPKRHGKSHSSKALTNIGGQALEESSSRRAALESSIHEVLFQIINFANEKKDH 156

Query: 173 IPPISDRIFNHEISIPR 189
           IPPI DRIFNHEISIPR
Sbjct: 157 IPPIPDRIFNHEISIPR 173



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.136    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,475,359
Number of extensions: 247978
Number of successful extensions: 512
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 512
Number of HSP's successfully gapped: 2
Length of query: 189
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 94
Effective length of database: 12,075,471
Effective search space: 1135094274
Effective search space used: 1135094274
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 153 (63.5 bits)