BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0446700 Os12g0446700|AK071147
         (189 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G66930.3  | chr5:26725839-26727549 FORWARD LENGTH=252          220   3e-58

>AT5G66930.3 | chr5:26725839-26727549 FORWARD LENGTH=252
          Length = 251

 Score =  220 bits (561), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 110/181 (60%), Positives = 139/181 (76%), Gaps = 6/181 (3%)

Query: 12  ELEQDEIKDVLRCILHTIFFHRTLTLVRPKDVDCDLFEITYVQCGLPDLEKEVDEKINQF 71
           E+E  EI++VLRCILHTI FHR L L+RPKD+D +LFEITYVQCG  ++EK++DEKI QF
Sbjct: 48  EVESFEIREVLRCILHTIVFHRALGLIRPKDIDLELFEITYVQCGEIEVEKKIDEKIEQF 107

Query: 72  IAWVEKHPNRRSQVCLSFFDEKNKNPSWFTSKTERIYWEQWFINLHVISPKGH--GKSRS 129
           I W+EKHPN++SQ+CLSF++ K+K PSWFT K ER+YWEQW+INL+V+ P     GKS  
Sbjct: 108 INWIEKHPNKKSQICLSFYEVKSKQPSWFT-KIERLYWEQWYINLNVLQPTKPPVGKSHH 166

Query: 130 SKASTSIRGKALEEASSKRAALGLLIQEVLFQIINFANEKKDHIPPISDRI--FNHEISI 187
           SK      G+A EE SS+R  L   +QEVLFQII F NEKKDH+PPI+D +  +  EI+I
Sbjct: 167 SKLVMD-PGEASEERSSRRTLLEQSLQEVLFQIIKFVNEKKDHVPPINDGVIYYPFEITI 225

Query: 188 P 188
           P
Sbjct: 226 P 226



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.136    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,421,279
Number of extensions: 180436
Number of successful extensions: 475
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 473
Number of HSP's successfully gapped: 1
Length of query: 189
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 96
Effective length of database: 8,556,881
Effective search space: 821460576
Effective search space used: 821460576
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 109 (46.6 bits)