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Os12g0421000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Barley stem rust resistance protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.37 (0.0296) R2 : 0.758
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.88 (0.0776) R2dC : 0.737 R2C : 0.718
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.473 (0.0623) R2dN8 : 0.0396 R2N8 : 0.0201
σ : 0.559
deviance : 142.58
__
_____
C
peak time of C : 6.24
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
110.68 0.494 9.38 -0.776 2.78 0.85 1.49 1.43 -0.441 6.2 25.3 496 -- --
113.15 0.495 9.35 -0.542 2.79 0.77 1.96 -- -0.384 6.21 25.29 468 -- --
115.41 0.5 9.39 -0.839 2.76 0.904 -- 2.04 -0.447 6.18 25.7 474 -- --
121.49 0.513 9.36 -0.5 2.78 0.753 -- -- -0.388 6.17 25.7 498 -- --
398.6 0.93 9.42 -0.65 -- 2.63 -- 4.01 -0.157 -- 31.25 374 -- --
121.18 0.516 9.39 -0.727 2.88 -- 1.83 -- -0.545 6.25 -- -- -- --
129.43 0.533 9.39 -0.706 2.89 -- -- -- -0.552 6.23 -- -- -- --
400.34 0.932 9.33 0.0752 -- 3.24 -- -- -1.75e-05 -- 32.93 386 -- --
127.81 0.527 9.34 -- 2.79 0.858 -- -- -0.301 6.19 25.75 492 -- --
563.51 1.11 9.44 -0.627 -- -- -- -- -0.488 -- -- -- -- --
142.58 0.559 9.37 -- 2.88 -- -- -- -0.473 6.24 -- -- -- --
400.47 0.932 9.34 -- -- 3.22 -- -- -0.0131 -- 33 386 -- --
573.89 1.12 9.43 -- -- -- -- -- -0.419 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 103.32 temperature 20.0 90 > th dose independent rect. 14 14
2 103.46 temperature 20.0 270 > th dose independent rect. 12 14
5 104.26 temperature 20.0 90 > th dose independent rect. 23 19
6 104.47 temperature 10.0 270 > th dose dependent rect. 21 11
7 104.55 temperature 20.0 90 > th dose independent rect. 24 17
11 104.96 temperature 20.0 10 > th dose independent rect. 24 18
22 105.58 temperature 20.0 270 > th dose independent rect. 22 5
32 106.25 temperature 10.0 270 > th dose dependent rect. 22 18
39 106.44 temperature 20.0 270 > th dose independent rect. 23 3
46 106.77 humidity 50.0 10 > th dose dependent rect. 14 4
56 107.10 temperature 20.0 270 > th dose independent rect. 22 10
57 107.15 temperature 10.0 270 > th dose dependent rect. 21 20
62 107.22 precipitation 0.1 270 < th dose independent rect. 2 10
63 107.22 precipitation 0.1 270 < th dose dependent rect. 2 10
68 107.30 wind 1.0 270 > th dose independent rect. 2 10
71 107.32 wind 9.0 270 < th dose independent rect. 12 14
78 107.54 temperature 10.0 90 > th dose dependent rect. 24 17
95 108.00 temperature 15.0 270 > th dose dependent rect. 22 6
96 108.03 temperature 10.0 270 > th dose independent rect. 2 10
97 108.03 atmosphere 995.0 270 > th dose independent rect. 2 10
98 108.03 atmosphere 1015.0 270 < th dose independent rect. 2 10
99 108.03 temperature 10.0 270 > th dose independent rect. 12 14
101 108.08 wind 7.0 270 < th dose independent rect. 22 19
102 108.10 precipitation 0.1 90 < th dose independent rect. 17 21
103 108.10 precipitation 0.1 90 < th dose dependent rect. 17 21
110 108.28 precipitation 0.1 270 < th dose independent rect. 17 5
111 108.28 precipitation 0.1 270 < th dose dependent rect. 17 5
122 108.47 humidity 60.0 10 > th dose independent rect. 14 4
123 108.49 wind 7.0 270 < th dose independent rect. 17 5
125 108.50 wind 9.0 270 < th dose independent rect. 2 10
141 108.70 temperature 30.0 270 < th dose dependent rect. 18 18
149 108.75 wind 9.0 90 < th dose independent rect. 14 14
155 108.79 temperature 20.0 90 > th dose independent rect. 14 18
158 108.85 wind 9.0 10 < th dose independent rect. 14 4
160 108.86 temperature 20.0 10 > th dose independent rect. 23 9
161 108.86 wind 9.0 10 < th dose independent rect. 24 18
164 108.88 radiation 40.0 270 < th dose independent rect. 16 21
171 108.92 temperature 30.0 10 < th dose independent rect. 14 4
175 108.93 radiation 30.0 270 < th dose independent rect. 17 18
179 108.97 wind 9.0 90 < th dose independent rect. 24 17
181 108.98 wind 1.0 270 > th dose independent rect. 17 5
185 109.00 wind 1.0 270 > th dose independent rect. 16 19
192 109.04 wind 9.0 30 < th dose dependent rect. 14 4
202 109.11 precipitation 0.1 270 < th dose independent rect. 15 22
204 109.11 precipitation 0.1 270 < th dose dependent rect. 15 22
209 109.14 temperature 10.0 30 > th dose independent rect. 14 4
211 109.14 atmosphere 1010.0 30 < th dose independent rect. 14 4
213 109.14 radiation 40.0 30 < th dose independent rect. 14 4
215 109.14 temperature 10.0 30 > th dose independent rect. 18 20
219 109.16 temperature 10.0 270 > th dose independent rect. 17 5
220 109.16 radiation 20.0 270 < th dose independent rect. 17 5
224 109.16 atmosphere 995.0 30 > th dose independent rect. 18 20
237 109.20 temperature 20.0 270 > th dose independent rect. 11 21
242 109.23 atmosphere 995.0 270 > th dose independent rect. 22 19
243 109.23 wind 9.0 30 < th dose independent rect. 18 20
245 109.25 radiation 40.0 14400 < th dose independent rect. 16 3
247 109.25 temperature 10.0 90 > th dose independent rect. 4 10
248 109.25 atmosphere 995.0 90 > th dose independent rect. 4 10
249 109.25 atmosphere 1015.0 90 < th dose independent rect. 4 10
254 109.27 wind 9.0 270 < th dose dependent rect. 22 19
264 109.32 atmosphere 1015.0 270 < th dose independent rect. 22 19
271 109.36 atmosphere 995.0 30 > th dose independent rect. 14 4
273 109.36 temperature 10.0 10 > th dose dependent rect. 24 18
283 109.43 wind 1.0 10 > th dose independent rect. 14 4
284 109.44 radiation 40.0 270 < th dose independent rect. 8 14
307 109.52 humidity 70.0 10 > th dose dependent rect. 24 18
324 109.58 humidity 50.0 270 > th dose independent rect. 2 10
336 109.61 radiation 10.0 10 < th dose independent rect. 18 6
340 109.62 atmosphere 1015.0 10 < th dose independent rect. 24 18
341 109.62 radiation 10.0 10 < th dose dependent rect. 18 6
343 109.63 precipitation 0.1 10 < th dose independent rect. 14 4
345 109.63 wind 9.0 10 < th dose independent rect. 18 6
348 109.63 precipitation 0.1 10 < th dose dependent rect. 14 4
351 109.64 temperature 10.0 10 > th dose independent rect. 18 6
352 109.64 humidity 50.0 10 > th dose independent rect. 18 6
359 109.64 radiation 40.0 90 < th dose independent rect. 14 14
365 109.65 wind 7.0 270 < th dose independent rect. 11 6
374 109.69 atmosphere 995.0 10 > th dose independent rect. 18 6
381 109.73 radiation 40.0 90 < th dose dependent rect. 15 2
383 109.74 atmosphere 1015.0 90 < th dose independent rect. 24 17
393 109.75 wind 9.0 90 < th dose independent rect. 4 10
400 109.78 radiation 40.0 270 < th dose dependent rect. 17 5
402 109.78 humidity 50.0 10 > th dose dependent rect. 24 18
403 109.79 atmosphere 995.0 270 > th dose independent rect. 12 14
452 109.89 temperature 20.0 720 > th dose independent rect. 6 19
470 109.92 temperature 25.0 1440 < th dose dependent rect. 9 2
492 109.96 atmosphere 995.0 270 > th dose independent rect. 17 5
507 109.99 atmosphere 1010.0 90 < th dose independent rect. 14 14
519 110.00 atmosphere 995.0 10 > th dose dependent rect. 18 20
527 110.02 humidity 80.0 10 > th dose independent rect. 24 20
534 110.04 wind 9.0 270 < th dose dependent rect. 16 6
546 110.06 precipitation 0.1 270 < th dose independent rect. 17 18
548 110.06 precipitation 0.1 270 < th dose dependent rect. 17 18
559 110.08 humidity 50.0 270 > th dose independent rect. 22 19
565 110.10 atmosphere 995.0 10 > th dose independent rect. 24 18
576 110.13 humidity 50.0 270 > th dose independent rect. 17 5
602 110.19 humidity 50.0 270 > th dose dependent rect. 21 11
605 110.21 precipitation 0.1 270 < th dose independent rect. 22 18
606 110.21 precipitation 0.1 270 < th dose dependent rect. 22 18
615 110.25 atmosphere 1015.0 270 < th dose independent rect. 17 5
625 110.27 atmosphere 995.0 90 > th dose independent rect. 24 17
637 110.29 humidity 90.0 30 < th dose independent rect. 18 20
647 110.31 radiation 40.0 270 < th dose dependent rect. 17 18
652 110.32 temperature 10.0 30 > th dose dependent rect. 14 14
724 110.48 temperature 30.0 270 < th dose independent rect. 2 10
737 110.52 atmosphere 995.0 90 > th dose independent rect. 14 14
761 110.56 radiation 40.0 10 < th dose dependent rect. 14 4
775 110.59 radiation 10.0 10 < th dose dependent rect. 15 2
830 110.66 wind 9.0 720 < th dose dependent rect. 5 5
840 110.68 humidity 80.0 270 > th dose independent rect. 22 9
844 110.68 humidity 70.0 10 > th dose dependent rect. 22 22
867 110.71 wind 1.0 270 > th dose independent rect. 11 6
876 110.72 wind 1.0 270 > th dose independent rect. 12 4
883 110.73 radiation 40.0 270 < th dose independent rect. 3 10
905 110.77 radiation 1.0 10 < th dose dependent rect. 24 18
909 110.78 humidity 50.0 270 > th dose independent rect. 18 3
948 110.83 radiation 40.0 270 < th dose independent rect. 14 1
954 110.83 precipitation 0.1 270 < th dose independent rect. 8 14
956 110.83 radiation 1.0 10 < th dose independent rect. 24 18
958 110.83 precipitation 0.1 270 < th dose dependent rect. 8 14
960 110.84 atmosphere 1010.0 270 < th dose independent rect. 22 10
963 110.84 temperature 25.0 720 < th dose dependent rect. 8 19
979 110.86 wind 9.0 270 < th dose dependent rect. 14 1
980 110.86 atmosphere 995.0 10 > th dose dependent rect. 18 6
984 110.87 humidity 60.0 30 > th dose independent rect. 18 20
989 110.88 wind 3.0 720 < th dose independent rect. 6 2
990 110.88 radiation 40.0 14400 < th dose independent rect. 16 5
994 110.89 humidity 50.0 90 > th dose independent rect. 24 17