BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0421000 Os12g0421000|AK071491
         (239 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G01490.1  | chr1:180401-182066 REVERSE LENGTH=178               89   2e-18
AT3G05920.1  | chr3:1768991-1769522 REVERSE LENGTH=127             52   3e-07
AT5G26690.1  | chr5:9310905-9311411 FORWARD LENGTH=115             51   6e-07
AT5G52740.1  | chr5:21382530-21383180 FORWARD LENGTH=119           50   8e-07
AT5G23760.1  | chr5:8013242-8014129 REVERSE LENGTH=104             49   2e-06
AT5G52760.1  | chr5:21386919-21387540 FORWARD LENGTH=127           47   6e-06
AT5G52750.1  | chr5:21384134-21384795 FORWARD LENGTH=140           47   6e-06

>AT1G01490.1 | chr1:180401-182066 REVERSE LENGTH=178
          Length = 177

 Score = 89.4 bits (220), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 46/70 (65%), Positives = 57/70 (81%)

Query: 3  KKIVVKLDLHDNKDKQKAMKAVSSVIGIDAISMDMASRKMTVIGTVDPVDVVSKLRKASW 62
          KKIV+KLDLHD++ KQKA+K VS++ GID+I+MDM  +K+TVIGTVDPV+VVSKLRK   
Sbjct: 2  KKIVLKLDLHDDRAKQKALKTVSTLPGIDSIAMDMKEKKLTVIGTVDPVNVVSKLRKYWP 61

Query: 63 AAYIESVGPA 72
             I  VGPA
Sbjct: 62 MTDIVLVGPA 71



>AT3G05920.1 | chr3:1768991-1769522 REVERSE LENGTH=127
          Length = 126

 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 44/68 (64%)

Query: 3  KKIVVKLDLHDNKDKQKAMKAVSSVIGIDAISMDMASRKMTVIGTVDPVDVVSKLRKASW 62
          KK+ +K+D++  K     M+AV+ + G++ IS+D  +  +TV+GT+DPV V ++L+K   
Sbjct: 4  KKVEIKVDINCGKCNSAIMEAVTEIEGVNHISLDEGNSILTVVGTMDPVCVATRLKKIKQ 63

Query: 63 AAYIESVG 70
             I SVG
Sbjct: 64 KPVIISVG 71



>AT5G26690.1 | chr5:9310905-9311411 FORWARD LENGTH=115
          Length = 114

 Score = 50.8 bits (120), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 44/69 (63%)

Query: 2  SKKIVVKLDLHDNKDKQKAMKAVSSVIGIDAISMDMASRKMTVIGTVDPVDVVSKLRKAS 61
          +KKI +K+D+   K K   M+AV+ + G++ +S+D     +TV+GT+DPV V  +L+K +
Sbjct: 3  TKKIEIKVDIDCEKCKHAIMEAVTELEGVNIVSLDQEKSILTVVGTMDPVCVAEQLKKIN 62

Query: 62 WAAYIESVG 70
              + SVG
Sbjct: 63 KKPVVISVG 71



>AT5G52740.1 | chr5:21382530-21383180 FORWARD LENGTH=119
          Length = 118

 Score = 50.4 bits (119), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 42/67 (62%), Gaps = 3/67 (4%)

Query: 5  IVVKLDLHDNKDKQKAMKAVSSVIGIDAISMDMASRKMTVIGTVDPVDVVSKLRKASWAA 64
          +V+KLD+H  K KQKAM  V  + G++  S+++   K+TV G +D   +V KL+K     
Sbjct: 4  VVLKLDVHCEKTKQKAMSTVCCLSGVN--SVEVKDGKLTVTGEIDAYMIVKKLKKICHTE 61

Query: 65 YIESVGP 71
          +I SVGP
Sbjct: 62 FI-SVGP 67



>AT5G23760.1 | chr5:8013242-8014129 REVERSE LENGTH=104
          Length = 103

 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/73 (47%), Positives = 52/73 (71%), Gaps = 2/73 (2%)

Query: 1  MSKKIVVK-LDLHDNKDKQKAMKAVSSVIGIDAISMDMASRKMTVIGTVDPVDVVSKLRK 59
          M++K+V+K L + D+K KQKA++A + + G+D+I+ DM  +K+TVIG +D V VV KL+K
Sbjct: 1  MAQKVVLKVLTMTDDKTKQKAIEAAADIFGVDSIAADMKDQKLTVIGLMDAVAVVKKLKK 60

Query: 60 ASWAAYIESVGPA 72
                I SVGPA
Sbjct: 61 VGKVDLI-SVGPA 72



>AT5G52760.1 | chr5:21386919-21387540 FORWARD LENGTH=127
          Length = 126

 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 39/58 (67%), Gaps = 1/58 (1%)

Query: 2  SKKIVVKLDLHDNKDKQKAMKAVSSVIGIDAISMDMASRKMTVIGTVDPVDVVSKLRK 59
          +K  V++L +H+ + ++KA+  VS   G+ +I+MD  S KMT++G VD   VV KLRK
Sbjct: 3  AKNAVLQLSIHEERTRKKALVTVSRFSGVTSITMD-KSGKMTIVGEVDVPAVVMKLRK 59



>AT5G52750.1 | chr5:21384134-21384795 FORWARD LENGTH=140
          Length = 139

 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 37/56 (66%)

Query: 4  KIVVKLDLHDNKDKQKAMKAVSSVIGIDAISMDMASRKMTVIGTVDPVDVVSKLRK 59
          K V++L +H+ + ++KA   VS   G+ +I+MD  + KMTV+G VD   +V KLRK
Sbjct: 5  KAVLQLSIHEERIRKKAFVTVSRCPGVTSITMDDKTGKMTVVGEVDVPVIVMKLRK 60



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.127    0.360 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,983,085
Number of extensions: 44663
Number of successful extensions: 173
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 174
Number of HSP's successfully gapped: 7
Length of query: 239
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 143
Effective length of database: 8,474,633
Effective search space: 1211872519
Effective search space used: 1211872519
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 110 (47.0 bits)