Os12g0406200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 40S ribosomal protein S3a (CYC07 protein).
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Os12g0406200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 40S ribosomal protein S3a (CYC07 protein).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 112.69 | 0.499 | 12.3 | 0.39 | 0.607 | 1.07 | 1.18 | -1.04 | -0.0803 | 18.7 | 25.5 | 10 | -- | -- |
| 113.1 | 0.495 | 12.3 | 0.496 | 0.608 | 0.992 | 1.15 | -- | -0.0517 | 18.7 | 25.5 | 10 | -- | -- |
| 116.13 | 0.502 | 12.3 | 0.406 | 0.606 | 1.07 | -- | -0.666 | -0.068 | 18.7 | 25.52 | 10 | -- | -- |
| 116.29 | 0.502 | 12.3 | 0.48 | 0.613 | 1.01 | -- | -- | -0.0442 | 18.6 | 25.57 | 9 | -- | -- |
| 129.05 | 0.529 | 12.3 | 0.283 | -- | 1.33 | -- | -0.853 | -0.155 | -- | 24.28 | 151 | -- | -- |
| 127.72 | 0.53 | 12.3 | 0.628 | 0.869 | -- | 1.27 | -- | 0.00449 | 17.4 | -- | -- | -- | -- |
| 131.59 | 0.537 | 12.3 | 0.626 | 0.877 | -- | -- | -- | 0.0106 | 17.2 | -- | -- | -- | -- |
| 129.44 | 0.53 | 12.3 | 0.396 | -- | 1.25 | -- | -- | -0.136 | -- | 24.2 | 149 | -- | -- |
| 122.14 | 0.515 | 12.3 | -- | 0.578 | 1.08 | -- | -- | -0.104 | 18.6 | 25.5 | 10 | -- | -- |
| 171.76 | 0.612 | 12.3 | 0.595 | -- | -- | -- | -- | -0.0114 | -- | -- | -- | -- | -- |
| 141.9 | 0.557 | 12.3 | -- | 0.866 | -- | -- | -- | -0.0591 | 17.3 | -- | -- | -- | -- |
| 133.49 | 0.538 | 12.3 | -- | -- | 1.32 | -- | -- | -0.187 | -- | 24.2 | 138 | -- | -- |
| 181.1 | 0.628 | 12.3 | -- | -- | -- | -- | -- | -0.0774 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 99.04 | temperature | 25 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 3 | 99.74 | temperature | 25 | 270 | > th | dose dependent | rect. | 8 | 3 |
| 5 | 100.46 | temperature | 20 | 90 | > th | dose dependent | rect. | 8 | 7 |
| 32 | 102.13 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 5 |
| 33 | 102.17 | temperature | 25 | 90 | > th | dose dependent | sin | 4 | NA |
| 34 | 102.22 | temperature | 10 | 90 | > th | dose dependent | rect. | 8 | 19 |
| 36 | 102.27 | temperature | 25 | 270 | > th | dose dependent | rect. | 19 | 17 |
| 43 | 102.44 | temperature | 25 | 90 | > th | dose dependent | rect. | 19 | 19 |
| 67 | 103.03 | temperature | 25 | 270 | > th | dose dependent | sin | 7 | NA |
| 88 | 103.52 | temperature | 10 | 90 | > th | dose dependent | rect. | 8 | 15 |
| 93 | 103.58 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 18 |
| 99 | 103.66 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 15 |
| 263 | 105.70 | temperature | 25 | 270 | > th | dose independent | rect. | 9 | 1 |
| 391 | 107.01 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 20 |
| 460 | 107.56 | temperature | 10 | 90 | > th | dose dependent | sin | 2 | NA |
| 497 | 107.85 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 506 | 107.91 | temperature | 30 | 90 | < th | dose independent | sin | 6 | NA |
| 597 | 108.59 | radiation | 40 | 270 | > th | dose independent | rect. | 9 | 1 |
| 635 | 108.88 | temperature | 30 | 90 | < th | dose independent | rect. | 3 | 16 |
| 660 | 109.03 | temperature | 30 | 90 | > th | dose independent | sin | 6 | NA |
| 674 | 109.12 | temperature | 30 | 90 | < th | dose dependent | sin | 1 | NA |
| 691 | 109.24 | temperature | 10 | 43200 | > th | dose independent | rect. | 9 | 7 |
| 730 | 109.38 | radiation | 1 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 778 | 109.67 | radiation | 30 | 270 | > th | dose dependent | rect. | 9 | 1 |