BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0406200 Os12g0406200|AK071037
(260 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G34670.1 | chr4:16548724-16550222 FORWARD LENGTH=263 418 e-117
AT3G04840.1 | chr3:1329751-1331418 FORWARD LENGTH=263 412 e-116
>AT4G34670.1 | chr4:16548724-16550222 FORWARD LENGTH=263
Length = 262
Score = 418 bits (1074), Expect = e-117, Method: Compositional matrix adjust.
Identities = 198/233 (84%), Positives = 213/233 (91%), Gaps = 1/233 (0%)
Query: 21 VDPFAKKDWYDIKAPSVFNVRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDQA 80
VDPF+KKDWYD+KAP F RNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED A
Sbjct: 21 VDPFSKKDWYDVKAPGSFTNRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDNA 80
Query: 81 YRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLFCI 140
YRKIRLRAEDVQG+NVLT FWGM FTTDKLRSLVKKWQTLIEAHVDVKTTD Y LR+FCI
Sbjct: 81 YRKIRLRAEDVQGRNVLTQFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDGYTLRMFCI 140
Query: 141 GFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMVNQASSCDLKELVSKFIPEVIGKEIEKA 200
FTKRR NQVKRTCYAQ+SQIRQIRRKM EIMV +ASSCDLKELV+KFIPE IG+EIEKA
Sbjct: 141 AFTKRRANQVKRTCYAQSSQIRQIRRKMSEIMVKEASSCDLKELVAKFIPEAIGREIEKA 200
Query: 201 TSSIFPLQNVFVRKVKILKAPKFDLGKLMEVHGDY-KEDVGTKLERPAEDEVV 252
T I+PLQNVF+RKVKILKAPKFDLGKLMEVHGDY EDVG K++RPA++ +V
Sbjct: 201 TQGIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYTAEDVGVKVDRPADETMV 253
>AT3G04840.1 | chr3:1329751-1331418 FORWARD LENGTH=263
Length = 262
Score = 412 bits (1060), Expect = e-116, Method: Compositional matrix adjust.
Identities = 195/234 (83%), Positives = 213/234 (91%), Gaps = 1/234 (0%)
Query: 20 TVDPFAKKDWYDIKAPSVFNVRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDQ 79
VDPF+KKDWYD+KAPS+F RNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQ DED
Sbjct: 20 AVDPFSKKDWYDVKAPSIFTHRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQGDEDN 79
Query: 80 AYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLFC 139
AYRKIRLRAEDVQG+NVL FWGM FTTDKLRSLVKKWQTLIEAHVDVKTTD+Y LRLFC
Sbjct: 80 AYRKIRLRAEDVQGRNVLCQFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDSYTLRLFC 139
Query: 140 IGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMVNQASSCDLKELVSKFIPEVIGKEIEK 199
I FTKRR NQVKRTCYAQ+SQIRQIRRKM +IMV +ASSCDLK+LV+KFIPE IG+EIEK
Sbjct: 140 IAFTKRRANQVKRTCYAQSSQIRQIRRKMRDIMVREASSCDLKDLVAKFIPEAIGREIEK 199
Query: 200 ATSSIFPLQNVFVRKVKILKAPKFDLGKLMEVHGDYK-EDVGTKLERPAEDEVV 252
AT I+PLQNVF+RKVKILKAPKFDLGKLM+VHGDY EDVG K++RPA++ V
Sbjct: 200 ATQGIYPLQNVFIRKVKILKAPKFDLGKLMDVHGDYSAEDVGVKVDRPADEMAV 253
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.134 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,843,044
Number of extensions: 184853
Number of successful extensions: 530
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 528
Number of HSP's successfully gapped: 2
Length of query: 260
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 163
Effective length of database: 8,447,217
Effective search space: 1376896371
Effective search space used: 1376896371
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 110 (47.0 bits)