BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0406200 Os12g0406200|AK071037
(260 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0406200 Similar to 40S ribosomal protein S3a (CYC07 pr... 499 e-142
Os03g0200500 40S ribosomal protein S3a (CYC07 protein) 481 e-136
Os02g0287000 Similar to 40S ribosomal protein S3a (CYC07 pr... 461 e-130
AK109039 253 8e-68
>Os12g0406200 Similar to 40S ribosomal protein S3a (CYC07 protein)
Length = 260
Score = 499 bits (1285), Expect = e-142, Method: Compositional matrix adjust.
Identities = 241/241 (100%), Positives = 241/241 (100%)
Query: 20 TVDPFAKKDWYDIKAPSVFNVRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDQ 79
TVDPFAKKDWYDIKAPSVFNVRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDQ
Sbjct: 20 TVDPFAKKDWYDIKAPSVFNVRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDQ 79
Query: 80 AYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLFC 139
AYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLFC
Sbjct: 80 AYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLFC 139
Query: 140 IGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMVNQASSCDLKELVSKFIPEVIGKEIEK 199
IGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMVNQASSCDLKELVSKFIPEVIGKEIEK
Sbjct: 140 IGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMVNQASSCDLKELVSKFIPEVIGKEIEK 199
Query: 200 ATSSIFPLQNVFVRKVKILKAPKFDLGKLMEVHGDYKEDVGTKLERPAEDEVVVGQEVTA 259
ATSSIFPLQNVFVRKVKILKAPKFDLGKLMEVHGDYKEDVGTKLERPAEDEVVVGQEVTA
Sbjct: 200 ATSSIFPLQNVFVRKVKILKAPKFDLGKLMEVHGDYKEDVGTKLERPAEDEVVVGQEVTA 259
Query: 260 E 260
E
Sbjct: 260 E 260
>Os03g0200500 40S ribosomal protein S3a (CYC07 protein)
Length = 262
Score = 481 bits (1237), Expect = e-136, Method: Compositional matrix adjust.
Identities = 231/241 (95%), Positives = 235/241 (97%), Gaps = 1/241 (0%)
Query: 20 TVDPFAKKDWYDIKAPSVFNVRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDQ 79
TVDPFAKKDWYDIKAPSVFNVRN+GKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDQ
Sbjct: 20 TVDPFAKKDWYDIKAPSVFNVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDQ 79
Query: 80 AYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLFC 139
AYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTD YMLRLFC
Sbjct: 80 AYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDGYMLRLFC 139
Query: 140 IGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMVNQASSCDLKELVSKFIPEVIGKEIEK 199
IGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIM NQASSCDLKELVSKFIPEVIGKEIEK
Sbjct: 140 IGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQASSCDLKELVSKFIPEVIGKEIEK 199
Query: 200 ATSSIFPLQNVFVRKVKILKAPKFDLGKLMEVHGDY-KEDVGTKLERPAEDEVVVGQEVT 258
ATSSIFPLQNVFVRKVKILKAPKFDLGKLMEVHGDY KED+GTKL+RPAEDE + GQEV
Sbjct: 200 ATSSIFPLQNVFVRKVKILKAPKFDLGKLMEVHGDYAKEDIGTKLDRPAEDEAMAGQEVA 259
Query: 259 A 259
A
Sbjct: 260 A 260
>Os02g0287000 Similar to 40S ribosomal protein S3a (CYC07 protein)
Length = 261
Score = 461 bits (1186), Expect = e-130, Method: Compositional matrix adjust.
Identities = 217/231 (93%), Positives = 228/231 (98%)
Query: 20 TVDPFAKKDWYDIKAPSVFNVRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDQ 79
TVDPF+KKDWYDIKAP+VF+VRN+GKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDQ
Sbjct: 20 TVDPFSKKDWYDIKAPTVFSVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDQ 79
Query: 80 AYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLFC 139
AYRK+RLRAEDVQG+NVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLFC
Sbjct: 80 AYRKVRLRAEDVQGRNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLFC 139
Query: 140 IGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMVNQASSCDLKELVSKFIPEVIGKEIEK 199
IGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIM NQAS+CDLKELVSKFIPEVIGKEIEK
Sbjct: 140 IGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQASTCDLKELVSKFIPEVIGKEIEK 199
Query: 200 ATSSIFPLQNVFVRKVKILKAPKFDLGKLMEVHGDYKEDVGTKLERPAEDE 250
+TSSIFPLQNVF+RKVKILKAPKFDLGKLMEVHGDYKEDVG KL+RPAE +
Sbjct: 200 STSSIFPLQNVFIRKVKILKAPKFDLGKLMEVHGDYKEDVGMKLDRPAETD 250
>AK109039
Length = 275
Score = 253 bits (647), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 118/214 (55%), Positives = 161/214 (75%), Gaps = 1/214 (0%)
Query: 21 VDPFAKKDWYDIKAPSVFNVRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQ-NDEDQ 79
DPF KK+WYD++ P+ F V++ GKT+ ++TQG K+A + L +R+ EVSL DL+ N E++
Sbjct: 21 ADPFLKKEWYDVRTPACFPVKSAGKTIATKTQGIKVARDTLMNRIIEVSLGDLKDNTEEE 80
Query: 80 AYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLFC 139
A+RK +LR EDV G N LT F GM TTDKLRSLV+K Q+LIEAHVD++T+D Y +RLF
Sbjct: 81 AFRKFKLRVEDVNGFNCLTQFHGMDLTTDKLRSLVRKNQSLIEAHVDIRTSDGYSVRLFA 140
Query: 140 IGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMVNQASSCDLKELVSKFIPEVIGKEIEK 199
IGFTK+ VK+T YA A+Q R IR+KM E+M + +S +L +LV+K E IGKEIEK
Sbjct: 141 IGFTKKHKEHVKKTAYASAAQTRAIRKKMKEVMNKETTSVELHDLVTKLTLETIGKEIEK 200
Query: 200 ATSSIFPLQNVFVRKVKILKAPKFDLGKLMEVHG 233
T +I+PL++V +RKVK+L+APK D+ KL+E G
Sbjct: 201 HTQAIYPLKDVLIRKVKMLRAPKADVSKLVEGAG 234
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.134 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,100,351
Number of extensions: 257929
Number of successful extensions: 674
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 672
Number of HSP's successfully gapped: 4
Length of query: 260
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 161
Effective length of database: 11,866,615
Effective search space: 1910525015
Effective search space used: 1910525015
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)