Os12g0406000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Protein kinase (EC 2.7.1.37).
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Os12g0406000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Protein kinase (EC 2.7.1.37).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 90.53 | 0.447 | 10.1 | -0.785 | 1.34 | -1.56 | -0.919 | -4.13 | -0.0069 | 20 | 0.702 | 1397 | -- | -- |
| 102.85 | 0.472 | 10.2 | -1.05 | 1.23 | -0.941 | -0.692 | -- | -0.0422 | 19.8 | 2.141 | 1335 | -- | -- |
| 92.72 | 0.448 | 10.1 | -0.761 | 1.39 | -1.51 | -- | -4 | 0.000831 | 20.2 | 0.7099 | 1414 | -- | -- |
| 103.17 | 0.473 | 10.2 | -1.04 | 1.2 | -1.01 | -- | -- | -0.0512 | 20 | 1.55 | 1332 | -- | -- |
| 123.2 | 0.517 | 10.2 | -1.18 | -- | -2.32 | -- | -2.3 | -0.178 | -- | 1.379 | 2445 | -- | -- |
| 114.61 | 0.502 | 10.2 | -1.05 | 1.46 | -- | -0.398 | -- | 0.0382 | 20.4 | -- | -- | -- | -- |
| 115.11 | 0.502 | 10.2 | -1.04 | 1.46 | -- | -- | -- | 0.0379 | 20.4 | -- | -- | -- | -- |
| 116.43 | 0.503 | 10.2 | -1.25 | -- | -2.35 | -- | -- | -0.27 | -- | 1.56 | 2435 | -- | -- |
| 137.66 | 0.546 | 10.2 | -- | 1.07 | -0.946 | -- | -- | 0.0223 | 19.8 | 2.27 | 1237 | -- | -- |
| 233.43 | 0.714 | 10.1 | -1.05 | -- | -- | -- | -- | 0.0234 | -- | -- | -- | -- | -- |
| 143.78 | 0.561 | 10.2 | -- | 1.46 | -- | -- | -- | 0.154 | 20.4 | -- | -- | -- | -- |
| 158.26 | 0.586 | 10.2 | -- | -- | -2.28 | -- | -- | -0.156 | -- | 1.58 | 2408 | -- | -- |
| 262.52 | 0.756 | 10.1 | -- | -- | -- | -- | -- | 0.14 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 89.56 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 16 | 2 |
| 3 | 89.95 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 8 |
| 5 | 89.99 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 8 |
| 6 | 89.99 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 8 |
| 7 | 90.00 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 16 | 2 |
| 13 | 90.24 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 14 | 90.26 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 3 |
| 20 | 90.60 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 5 | 18 |
| 22 | 90.64 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 9 | 15 |
| 31 | 90.68 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 13 | 11 |
| 33 | 90.68 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 9 | 15 |
| 35 | 90.68 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 9 | 15 |
| 46 | 90.73 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 11 |
| 49 | 90.73 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 13 | 11 |
| 81 | 90.80 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 7 | 17 |
| 107 | 90.89 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 7 | 13 |
| 161 | 91.02 | radiation | 1.0 | 1440 | < th | dose dependent | sin | 22 | NA |
| 187 | 91.14 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 17 | NA |
| 190 | 91.15 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 17 | NA |
| 191 | 91.15 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 17 | NA |
| 233 | 91.27 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 9 | 18 |
| 238 | 91.31 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 12 | 15 |
| 246 | 91.33 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 10 |
| 248 | 91.33 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 6 | 21 |
| 277 | 91.52 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 17 | 2 |
| 354 | 91.67 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 6 | 16 |
| 389 | 91.79 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 16 | NA |
| 468 | 91.93 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 469 | 91.93 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 492 | 92.02 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 525 | 92.10 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 21 | 21 |
| 551 | 92.18 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 21 |
| 573 | 92.24 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 581 | 92.27 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 8 | 14 |
| 592 | 92.32 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 624 | 92.40 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 14 |
| 657 | 92.45 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 17 |
| 730 | 92.56 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 21 |
| 750 | 92.60 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 757 | 92.61 | precipitation | 0.1 | 14400 | > th | dose dependent | no | NA | NA |
| 795 | 92.68 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 812 | 92.71 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 832 | 92.75 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 862 | 92.82 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 8 | 13 |
| 863 | 92.82 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 15 | 6 |
| 898 | 92.92 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 14 |
| 958 | 93.02 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 6 |
| 967 | 93.04 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 5 | 18 |
| 1000 | 93.11 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 8 | 14 |