BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0406000 Os12g0406000|AK065509
         (91 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G35310.1  | chr4:16802436-16804628 FORWARD LENGTH=557           52   4e-08
AT2G17290.1  | chr2:7517005-7519239 FORWARD LENGTH=545             52   7e-08
AT4G38230.2  | chr4:17928994-17931101 REVERSE LENGTH=515           49   8e-07

>AT4G35310.1 | chr4:16802436-16804628 FORWARD LENGTH=557
          Length = 556

 Score = 52.4 bits (124), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/49 (63%), Positives = 37/49 (75%), Gaps = 3/49 (6%)

Query: 23  KGIFDAVLKGHIDFQS--VLKISDSAKDLIEKKKLSHCSSERLKDHEVL 69
           +GIFDAVLKG+IDF+S     ISDSAKDLI ++ LS   +ERL  HEVL
Sbjct: 303 QGIFDAVLKGYIDFESDPWPVISDSAKDLI-RRMLSSKPAERLTAHEVL 350



>AT2G17290.1 | chr2:7517005-7519239 FORWARD LENGTH=545
          Length = 544

 Score = 51.6 bits (122), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 31/49 (63%), Positives = 35/49 (71%), Gaps = 3/49 (6%)

Query: 23  KGIFDAVLKGHIDFQS--VLKISDSAKDLIEKKKLSHCSSERLKDHEVL 69
           +GIFDAVLKG+IDF +     ISDSAKDLI +K L    SERL  HEVL
Sbjct: 291 QGIFDAVLKGYIDFDTDPWPVISDSAKDLI-RKMLCSSPSERLTAHEVL 338



>AT4G38230.2 | chr4:17928994-17931101 REVERSE LENGTH=515
          Length = 514

 Score = 48.5 bits (114), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 36/77 (46%), Positives = 43/77 (55%), Gaps = 15/77 (19%)

Query: 1   WSAAI------SGISGVKFEIQYISGIAKGIFDAVLKGHIDFQS--VLKISDSAKDLIEK 52
           W+A +      SG+     E Q      +GIFDAVLKGHIDF S     ISDSAK+LI +
Sbjct: 238 WTAGVILYILVSGVPPFWAETQ------QGIFDAVLKGHIDFDSDPWPLISDSAKNLI-R 290

Query: 53  KKLSHCSSERLKDHEVL 69
             L    SERL  H+VL
Sbjct: 291 GMLCSRPSERLTAHQVL 307



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.326    0.140    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,834,611
Number of extensions: 62683
Number of successful extensions: 327
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 334
Number of HSP's successfully gapped: 3
Length of query: 91
Length of database: 11,106,569
Length adjustment: 62
Effective length of query: 29
Effective length of database: 9,406,777
Effective search space: 272796533
Effective search space used: 272796533
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 104 (44.7 bits)