Os12g0290100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os12g0290100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 26.5 | 0.242 | 11.1 | 0.227 | 0.475 | 0.469 | -0.012 | -0.343 | 0.533 | 1.77 | 26.45 | 72 | -- | -- |
| 26.7 | 0.241 | 11.1 | 0.226 | 0.546 | 0.505 | -0.216 | -- | 0.537 | 1.52 | 47.01 | 58 | -- | -- |
| 26.47 | 0.24 | 11.1 | 0.234 | 0.486 | 0.469 | -- | -0.347 | 0.527 | 1.84 | 26.94 | 63 | -- | -- |
| 26.78 | 0.241 | 11.1 | 0.212 | 0.577 | 0.562 | -- | -- | 0.522 | 1.59 | 85.33 | 56 | -- | -- |
| 29.29 | 0.252 | 11.1 | 0.23 | -- | 0.782 | -- | -0.292 | 0.577 | -- | 17.01 | 125 | -- | -- |
| 30.33 | 0.258 | 11.1 | 0.207 | 0.884 | -- | -0.243 | -- | 0.502 | 1.2 | -- | -- | -- | -- |
| 30.58 | 0.259 | 11.1 | 0.216 | 0.885 | -- | -- | -- | 0.504 | 1.19 | -- | -- | -- | -- |
| 29.71 | 0.254 | 11.1 | 0.255 | -- | 0.768 | -- | -- | 0.545 | -- | 14.44 | 136 | -- | -- |
| 28 | 0.246 | 11.1 | -- | 0.579 | 0.56 | -- | -- | 0.499 | 1.62 | 116.2 | 56 | -- | -- |
| 79.01 | 0.415 | 11.1 | 0.25 | -- | -- | -- | -- | 0.522 | -- | -- | -- | -- | -- |
| 31.81 | 0.264 | 11.1 | -- | 0.888 | -- | -- | -- | 0.48 | 1.2 | -- | -- | -- | -- |
| 31.35 | 0.261 | 11.1 | -- | -- | 0.744 | -- | -- | 0.509 | -- | 10.25 | 142 | -- | -- |
| 80.66 | 0.419 | 11.1 | -- | -- | -- | -- | -- | 0.494 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 26.26 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 17 | 22 |
| 6 | 26.44 | radiation | 1.0 | 30 | > th | dose dependent | rect. | 15 | 23 |
| 8 | 26.50 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 20 | 7 |
| 10 | 26.50 | radiation | 30.0 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 12 | 26.53 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 20 | 5 |
| 13 | 26.53 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 12 | 15 |
| 17 | 26.55 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 21 | 5 |
| 19 | 26.55 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 38 | 26.59 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 4 | 3 |
| 45 | 26.60 | temperature | 20.0 | 720 | < th | dose dependent | sin | 16 | NA |
| 65 | 26.64 | temperature | 15.0 | 4320 | < th | dose dependent | rect. | 1 | 4 |
| 76 | 26.67 | wind | 1.0 | 43200 | > th | dose independent | rect. | 4 | 3 |
| 84 | 26.68 | temperature | 15.0 | 4320 | < th | dose dependent | rect. | 2 | 1 |
| 109 | 26.70 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 12 | 17 |
| 110 | 26.71 | radiation | 30.0 | 90 | < th | dose dependent | no | NA | NA |
| 130 | 26.73 | wind | 1.0 | 43200 | < th | dose independent | rect. | 4 | 3 |
| 138 | 26.74 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 23 | 1 |
| 140 | 26.74 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 2 | 6 |
| 169 | 26.77 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 17 | 9 |
| 178 | 26.77 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 14 | 20 |
| 185 | 26.77 | radiation | 30.0 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 187 | 26.78 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 15 | NA |
| 201 | 26.78 | radiation | 30.0 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 206 | 26.79 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 7 | 2 |
| 215 | 26.79 | radiation | 40.0 | 30 | < th | dose dependent | rect. | 3 | 12 |
| 226 | 26.79 | radiation | 30.0 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 227 | 26.80 | radiation | 40.0 | 10 | < th | dose independent | rect. | 3 | 12 |
| 271 | 26.82 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 15 | 1 |
| 273 | 26.82 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 15 | 1 |
| 286 | 26.82 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 1 | 21 |
| 304 | 26.83 | radiation | 30.0 | 90 | < th | dose dependent | rect. | 7 | 23 |
| 328 | 26.85 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 4 | 19 |
| 329 | 26.85 | radiation | 20.0 | 30 | < th | dose independent | rect. | 18 | 20 |
| 340 | 26.85 | radiation | 1.0 | 30 | > th | dose dependent | rect. | 6 | 12 |
| 366 | 26.85 | radiation | 1.0 | 30 | > th | dose dependent | rect. | 15 | 21 |
| 371 | 26.85 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 18 | 22 |
| 381 | 26.85 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 20 | 23 |
| 385 | 26.86 | humidity | 90.0 | 14400 | > th | dose dependent | no | NA | NA |
| 431 | 26.87 | radiation | 1.0 | 90 | > th | dose dependent | no | NA | NA |
| 432 | 26.87 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 7 | 1 |
| 526 | 26.88 | radiation | 1.0 | 30 | > th | dose dependent | rect. | 11 | 23 |
| 529 | 26.89 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 530 | 26.89 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 556 | 26.89 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 1 | 18 |
| 611 | 26.90 | temperature | 15.0 | 4320 | < th | dose dependent | sin | 5 | NA |
| 644 | 26.91 | radiation | 10.0 | 90 | > th | dose independent | rect. | 15 | 23 |
| 679 | 26.92 | radiation | 20.0 | 90 | < th | dose dependent | sin | 1 | NA |
| 701 | 26.93 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 703 | 26.93 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 24 | 1 |
| 717 | 26.93 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 1 | 16 |
| 725 | 26.94 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 728 | 26.94 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 750 | 26.95 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 764 | 26.95 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 2 | 14 |
| 769 | 26.95 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 14 | 19 |
| 770 | 26.95 | radiation | 30.0 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 771 | 26.96 | temperature | 15.0 | 10 | > th | dose independent | rect. | 18 | 13 |
| 772 | 26.96 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 18 | 19 |
| 774 | 26.96 | temperature | 20.0 | 30 | < th | dose dependent | sin | 13 | NA |
| 821 | 26.97 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 825 | 26.97 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 7 | 7 |
| 827 | 26.97 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 3 | 7 |
| 830 | 26.97 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 6 | 8 |
| 852 | 26.98 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 853 | 26.98 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 7 | 8 |
| 860 | 26.98 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 7 | 8 |
| 865 | 26.98 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 1 | 12 |
| 874 | 26.99 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 19 | 5 |
| 876 | 26.99 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 5 | NA |
| 880 | 26.99 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 901 | 26.99 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 2 | 12 |
| 988 | 27.00 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 19 | 5 |
| 989 | 27.00 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 8 |
| 996 | 27.00 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 997 | 27.00 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 14 | 1 |