BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0290100 Os12g0290100|016-083-B05
(170 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G14350.1 | chr4:8256449-8259934 REVERSE LENGTH=552 95 2e-20
AT3G23310.1 | chr3:8339799-8343355 FORWARD LENGTH=569 92 2e-19
AT2G20470.1 | chr2:8826277-8829497 REVERSE LENGTH=570 91 2e-19
AT1G03920.1 | chr1:1001473-1004240 FORWARD LENGTH=570 89 1e-18
AT1G30640.1 | chr1:10861297-10864700 FORWARD LENGTH=563 86 7e-18
AT4G33080.1 | chr4:15960146-15964296 FORWARD LENGTH=520 80 4e-16
AT2G19400.1 | chr2:8399523-8402481 REVERSE LENGTH=528 72 1e-13
AT5G09890.2 | chr5:3085810-3088842 REVERSE LENGTH=517 67 3e-12
>AT4G14350.1 | chr4:8256449-8259934 REVERSE LENGTH=552
Length = 551
Score = 94.7 bits (234), Expect = 2e-20, Method: Composition-based stats.
Identities = 44/61 (72%), Positives = 51/61 (83%)
Query: 9 RRRMLESKLADPDVSEEEQNNILKDFENREREIMRSRRHKMGVDDFELLTIIGRGAFGEV 68
RR+MLE KLA +VSEEEQNN+LKD E +E E MR +RHKMG DDFE LT+IG+GAFGEV
Sbjct: 74 RRKMLEKKLAAAEVSEEEQNNLLKDLEMKETEYMRRQRHKMGADDFEPLTMIGKGAFGEV 133
Query: 69 R 69
R
Sbjct: 134 R 134
Score = 61.6 bits (148), Expect = 2e-10, Method: Composition-based stats.
Identities = 28/33 (84%), Positives = 30/33 (90%)
Query: 134 QVRLCREKATSNVYAMKKLKKSEMLRRGQVIHV 166
+VR+CREK T NVYAMKKLKKSEMLRRGQV HV
Sbjct: 132 EVRICREKGTGNVYAMKKLKKSEMLRRGQVEHV 164
>AT3G23310.1 | chr3:8339799-8343355 FORWARD LENGTH=569
Length = 568
Score = 91.7 bits (226), Expect = 2e-19, Method: Composition-based stats.
Identities = 43/61 (70%), Positives = 50/61 (81%)
Query: 9 RRRMLESKLADPDVSEEEQNNILKDFENREREIMRSRRHKMGVDDFELLTIIGRGAFGEV 68
RR MLE+KLA +VSEEEQ N+LKD E +E E MR +RHKMG DDFE LT+IG+GAFGEV
Sbjct: 75 RRDMLENKLAAAEVSEEEQKNLLKDLEKKETEYMRRQRHKMGTDDFEPLTMIGKGAFGEV 134
Query: 69 R 69
R
Sbjct: 135 R 135
Score = 61.2 bits (147), Expect = 3e-10, Method: Composition-based stats.
Identities = 28/33 (84%), Positives = 30/33 (90%)
Query: 134 QVRLCREKATSNVYAMKKLKKSEMLRRGQVIHV 166
+VR+CREK T NVYAMKKLKKSEMLRRGQV HV
Sbjct: 133 EVRICREKTTGNVYAMKKLKKSEMLRRGQVEHV 165
>AT2G20470.1 | chr2:8826277-8829497 REVERSE LENGTH=570
Length = 569
Score = 91.3 bits (225), Expect = 2e-19, Method: Composition-based stats.
Identities = 43/61 (70%), Positives = 51/61 (83%)
Query: 9 RRRMLESKLADPDVSEEEQNNILKDFENREREIMRSRRHKMGVDDFELLTIIGRGAFGEV 68
RR MLE KLAD DVSEE+QNN+LK E +E E MR +RHK+GV DF+LLT+IG+GAFGEV
Sbjct: 79 RRSMLEQKLADADVSEEDQNNLLKFLEKKETEYMRLQRHKLGVADFDLLTMIGKGAFGEV 138
Query: 69 R 69
R
Sbjct: 139 R 139
Score = 57.8 bits (138), Expect = 3e-09, Method: Composition-based stats.
Identities = 39/98 (39%), Positives = 54/98 (55%), Gaps = 7/98 (7%)
Query: 69 RRALFLLPIFDADIVDCCVMRNKHQFLQYLEKPFIIHGEKKSIFRGNIYVLCFSCSLPPV 128
RR++ + DAD+ + +++ L++LEK E + R + V F
Sbjct: 79 RRSMLEQKLADADVSE----EDQNNLLKFLEKK---ETEYMRLQRHKLGVADFDLLTMIG 131
Query: 129 YIFILQVRLCREKATSNVYAMKKLKKSEMLRRGQVIHV 166
+VR+CREK T VYAMKKLKK+EMLRRGQV HV
Sbjct: 132 KGAFGEVRVCREKTTGQVYAMKKLKKAEMLRRGQVEHV 169
>AT1G03920.1 | chr1:1001473-1004240 FORWARD LENGTH=570
Length = 569
Score = 89.0 bits (219), Expect = 1e-18, Method: Composition-based stats.
Identities = 41/61 (67%), Positives = 48/61 (78%)
Query: 9 RRRMLESKLADPDVSEEEQNNILKDFENREREIMRSRRHKMGVDDFELLTIIGRGAFGEV 68
RR LE KLAD DV EE+Q N++K E +E E MR +RHKMG DDFELLT+IG+GAFGEV
Sbjct: 92 RRTTLEKKLADADVCEEDQTNLMKFLEKKETEYMRLQRHKMGADDFELLTMIGKGAFGEV 151
Query: 69 R 69
R
Sbjct: 152 R 152
Score = 50.4 bits (119), Expect = 4e-07, Method: Composition-based stats.
Identities = 24/33 (72%), Positives = 28/33 (84%)
Query: 134 QVRLCREKATSNVYAMKKLKKSEMLRRGQVIHV 166
+VR+ RE T +V+AMKKLKKSEMLRRGQV HV
Sbjct: 150 EVRVVREINTGHVFAMKKLKKSEMLRRGQVEHV 182
>AT1G30640.1 | chr1:10861297-10864700 FORWARD LENGTH=563
Length = 562
Score = 86.3 bits (212), Expect = 7e-18, Method: Composition-based stats.
Identities = 41/61 (67%), Positives = 50/61 (81%)
Query: 9 RRRMLESKLADPDVSEEEQNNILKDFENREREIMRSRRHKMGVDDFELLTIIGRGAFGEV 68
RR +LE LAD DV+ E++ +ILK+FE +E E MR +R KMGVDDFELL+IIGRGAFGEV
Sbjct: 75 RRSILEQNLADADVTVEDKMDILKNFEKKEMEYMRLQRQKMGVDDFELLSIIGRGAFGEV 134
Query: 69 R 69
R
Sbjct: 135 R 135
Score = 57.8 bits (138), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/33 (78%), Positives = 31/33 (93%)
Query: 134 QVRLCREKATSNVYAMKKLKKSEMLRRGQVIHV 166
+VR+C+EK+T +VYAMKKLKKSEMLRRGQV HV
Sbjct: 133 EVRICKEKSTGSVYAMKKLKKSEMLRRGQVEHV 165
>AT4G33080.1 | chr4:15960146-15964296 FORWARD LENGTH=520
Length = 519
Score = 80.5 bits (197), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 62/158 (39%), Positives = 73/158 (46%), Gaps = 67/158 (42%)
Query: 9 RRRMLESKLADPDVSEEEQNNILKDFENREREIMRSRRHKMGVDDFELLTIIGRGAFGEV 68
RR +LE KLA V +EEQ N++KD E +E E MR +R+K+ VDDFELLTIIGRGAFGEV
Sbjct: 49 RRWILERKLASSGVPKEEQINMIKDLERKETEFMRLKRNKISVDDFELLTIIGRGAFGEV 108
Query: 69 RRALFLLPIFDADIVDCCVMRNKHQFLQYLEKPFIIHGEKKSIFRGNIYVLCFSCSLPPV 128
R C E+KS GNIY +
Sbjct: 109 R---------------LCR-------------------ERKS---GNIYAM--------- 122
Query: 129 YIFILQVRLCREKATSNVYAMKKLKKSEMLRRGQVIHV 166
KKLKKSEM+ RGQV HV
Sbjct: 123 ---------------------KKLKKSEMVMRGQVEHV 139
>AT2G19400.1 | chr2:8399523-8402481 REVERSE LENGTH=528
Length = 527
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 72/158 (45%), Gaps = 67/158 (42%)
Query: 9 RRRMLESKLADPDVSEEEQNNILKDFENREREIMRSRRHKMGVDDFELLTIIGRGAFGEV 68
RR +LE K+A DVSE+EQ +L+D + +E E R R+++ VDDF+LL+IIGRGAFGEV
Sbjct: 60 RRWVLEQKIASLDVSEKEQLELLEDLQRKETEYTRLMRNRLCVDDFDLLSIIGRGAFGEV 119
Query: 69 RRALFLLPIFDADIVDCCVMRNKHQFLQYLEKPFIIHGEKKSIFRGNIYVLCFSCSLPPV 128
R + EKK+ GNIY +
Sbjct: 120 R----------------------------------LCREKKT---GNIYAM--------- 133
Query: 129 YIFILQVRLCREKATSNVYAMKKLKKSEMLRRGQVIHV 166
KKLKKSEML RGQV HV
Sbjct: 134 ---------------------KKLKKSEMLSRGQVEHV 150
>AT5G09890.2 | chr5:3085810-3088842 REVERSE LENGTH=517
Length = 516
Score = 67.4 bits (163), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/61 (50%), Positives = 45/61 (73%)
Query: 9 RRRMLESKLADPDVSEEEQNNILKDFENREREIMRSRRHKMGVDDFELLTIIGRGAFGEV 68
RRR + K+ + + EEQ+ ++++ RE E MR +R K+G+DDFELLT+IG+GAFGEV
Sbjct: 57 RRREFQRKVQEAQLPVEEQDEMMRNLARRETEYMRLQRRKIGIDDFELLTVIGKGAFGEV 116
Query: 69 R 69
R
Sbjct: 117 R 117
Score = 53.5 bits (127), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 25/33 (75%), Positives = 29/33 (87%)
Query: 134 QVRLCREKATSNVYAMKKLKKSEMLRRGQVIHV 166
+VRLCR ++TS VYAMKKLKK+EML RGQV HV
Sbjct: 115 EVRLCRLRSTSEVYAMKKLKKTEMLSRGQVEHV 147
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.329 0.143 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,779,986
Number of extensions: 155655
Number of successful extensions: 823
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 823
Number of HSP's successfully gapped: 16
Length of query: 170
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 79
Effective length of database: 8,611,713
Effective search space: 680325327
Effective search space used: 680325327
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 108 (46.2 bits)