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Os12g0288600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.21 (0.0256) R2 : 0.81
β1 : 2.58 (0.0937) R2dD : 0.331 R2D : 0.216
β2 : 3.38 (0.103) R2dC : 1.13 R2C : -0.217
β3 : 2.1 (0.0896) R2dE : 0.579 R2E : -0.698
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.01 (0.0548) R2dN8 : 0.19 R2N8 : 0.021
σ : 0.479
deviance : 105.61
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C
peak time of C : 16
E
wheather : radiation
threshold : 12.13
memory length : 23
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 3.51
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
105.75 0.483 7.22 2.58 3.25 1.9 -0.043 0.173 1 16.2 10.89 28 3.25 --
105.54 0.478 7.21 2.58 3.24 1.94 -0.197 -- 1.01 16.1 11.44 23 3.47 --
105.55 0.478 7.22 2.58 3.21 1.89 -- 0.213 0.998 16.2 11.24 23 3.33 --
105.61 0.479 7.21 2.58 3.38 2.1 -- -- 1.01 16 12.13 23 3.51 --
129.14 0.529 7.2 2.63 -- -2.11 -- 0.801 0.917 -- 86.09 460 2.95 --
132.05 0.539 7.25 2.59 2.08 -- -0.247 -- 0.906 18.5 -- -- -- --
132.2 0.538 7.25 2.6 2.08 -- -- -- 0.905 18.6 -- -- -- --
127.3 0.525 7.21 2.59 -- -2.13 -- -- 0.888 -- 62.11 374 1.81 --
279.06 0.778 7.27 -- 3.45 2.19 -- -- 0.771 16 9.992 55 3.69 --
356.47 0.882 7.21 2.55 -- -- -- -- 0.863 -- -- -- -- --
310.06 0.824 7.32 -- 2.04 -- -- -- 0.616 18.6 -- -- -- --
303.9 0.812 7.27 -- -- -2.15 -- -- 0.587 -- 44.04 457 2.26 --
527.59 1.07 7.28 -- -- -- -- -- 0.58 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 105.98 radiation 10.0 30 < th dose dependent sin 9 NA
3 106.63 humidity 90.0 30 < th dose independent rect. 3 6
7 107.62 radiation 1.0 90 > th dose independent rect. 4 5
20 107.84 wind 7.0 270 < th dose independent rect. 8 20
27 108.35 atmosphere 1000.0 270 > th dose dependent rect. 4 3
29 108.60 radiation 1.0 30 > th dose dependent rect. 18 15
30 108.62 radiation 1.0 30 > th dose dependent rect. 5 4
68 108.88 atmosphere 1000.0 90 > th dose dependent rect. 6 2
69 108.88 atmosphere 1000.0 270 > th dose dependent rect. 3 5
72 109.13 radiation 1.0 90 < th dose independent sin 9 NA
74 109.25 radiation 1.0 90 > th dose independent sin 9 NA
87 109.63 wind 7.0 270 < th dose independent rect. 8 9
96 110.10 atmosphere 1000.0 10 > th dose dependent rect. 6 3
117 110.39 atmosphere 1005.0 90 > th dose independent rect. 5 4
137 110.67 humidity 90.0 90 < th dose dependent rect. 3 4
139 110.73 wind 9.0 10 < th dose independent rect. 9 21
141 110.80 humidity 90.0 10 < th dose dependent rect. 3 6
167 111.10 wind 5.0 270 < th dose independent rect. 4 3
176 111.30 atmosphere 1005.0 10 > th dose independent rect. 6 3
178 111.34 radiation 30.0 270 < th dose independent rect. 3 6
187 111.44 radiation 1.0 90 < th dose independent rect. 23 7
204 111.57 humidity 90.0 10 < th dose independent rect. 5 4
207 111.62 radiation 1.0 90 < th dose dependent rect. 23 7
211 111.64 atmosphere 1005.0 10 > th dose dependent rect. 3 6
213 111.68 temperature 30.0 90 < th dose independent rect. 5 4
217 111.75 precipitation 0.1 90 < th dose independent rect. 5 4
218 111.75 precipitation 0.1 90 < th dose dependent rect. 5 4
224 111.85 humidity 60.0 90 > th dose independent rect. 5 4
227 111.90 temperature 10.0 90 > th dose independent rect. 5 4
230 111.90 atmosphere 995.0 90 > th dose independent rect. 5 4
231 111.90 atmosphere 1015.0 90 < th dose independent rect. 5 4
232 111.90 temperature 10.0 90 > th dose independent rect. 9 20
235 111.93 humidity 90.0 10 < th dose dependent rect. 6 3
242 112.01 radiation 1.0 90 < th dose dependent rect. 23 17
245 112.05 radiation 1.0 90 < th dose dependent rect. 23 11
255 112.08 radiation 40.0 270 < th dose independent rect. 4 3
256 112.08 temperature 10.0 270 > th dose independent rect. 7 21
269 112.16 precipitation 0.1 270 < th dose independent rect. 3 5
271 112.16 precipitation 0.1 270 < th dose dependent rect. 3 5
273 112.20 radiation 1.0 90 < th dose independent rect. 23 11
275 112.23 wind 9.0 270 < th dose dependent rect. 4 3
289 112.29 radiation 1.0 90 < th dose independent rect. 23 16
295 112.33 wind 9.0 270 < th dose dependent rect. 8 19
296 112.37 atmosphere 995.0 90 > th dose independent rect. 9 20
305 112.44 precipitation 0.1 10 < th dose independent rect. 6 3
307 112.44 precipitation 0.1 10 < th dose dependent rect. 6 3
309 112.45 wind 5.0 270 < th dose independent rect. 3 5
316 112.48 temperature 10.0 10 > th dose independent rect. 6 3
318 112.48 temperature 30.0 10 < th dose independent rect. 6 3
319 112.48 humidity 50.0 10 > th dose independent rect. 6 3
321 112.48 atmosphere 995.0 10 > th dose independent rect. 6 3
322 112.48 atmosphere 1015.0 10 < th dose independent rect. 6 3
323 112.48 temperature 10.0 10 > th dose independent rect. 9 21
333 112.53 temperature 30.0 270 < th dose dependent rect. 3 6
348 112.60 humidity 90.0 30 < th dose independent rect. 17 16
351 112.64 temperature 10.0 1440 > th dose independent rect. 7 3
354 112.64 atmosphere 995.0 1440 > th dose independent rect. 7 3
355 112.64 atmosphere 1015.0 1440 < th dose independent rect. 7 3
358 112.64 temperature 10.0 1440 > th dose independent rect. 10 21
373 112.71 wind 1.0 10 > th dose independent rect. 6 3
381 112.77 atmosphere 995.0 10 > th dose independent rect. 9 21
391 112.83 humidity 60.0 270 > th dose dependent rect. 22 5
417 112.98 temperature 30.0 270 < th dose dependent rect. 4 4
434 113.07 temperature 15.0 270 > th dose independent rect. 8 9
435 113.07 wind 9.0 10 < th dose dependent rect. 6 3
447 113.16 humidity 90.0 10 < th dose dependent rect. 20 13
470 113.29 radiation 40.0 270 < th dose dependent rect. 4 4
471 113.30 precipitation 0.1 270 < th dose independent rect. 17 15
474 113.30 precipitation 0.1 270 < th dose dependent rect. 17 15
476 113.31 radiation 40.0 270 < th dose dependent rect. 3 6
478 113.35 precipitation 0.1 90 < th dose independent rect. 9 20
479 113.35 precipitation 0.1 90 < th dose dependent rect. 9 20
498 113.44 precipitation 0.1 270 < th dose independent rect. 7 21
510 113.44 precipitation 0.1 270 < th dose dependent rect. 7 21
546 113.53 wind 9.0 270 < th dose dependent rect. 8 9
548 113.54 temperature 10.0 90 > th dose dependent rect. 5 4
566 113.60 radiation 40.0 90 < th dose independent rect. 5 6
574 113.66 atmosphere 995.0 270 > th dose independent rect. 7 21
593 113.79 radiation 40.0 270 < th dose independent rect. 17 15
625 113.91 precipitation 0.1 270 < th dose independent rect. 3 19
626 113.91 precipitation 0.1 270 < th dose dependent rect. 3 19
641 113.99 temperature 10.0 90 > th dose dependent rect. 9 20
646 114.03 atmosphere 1015.0 270 < th dose independent rect. 8 9
647 114.03 temperature 10.0 270 > th dose independent rect. 17 15
655 114.07 precipitation 0.1 270 < th dose independent rect. 8 9
657 114.07 precipitation 0.1 270 < th dose dependent rect. 8 9
677 114.12 temperature 30.0 90 < th dose dependent rect. 6 3
690 114.15 temperature 10.0 10 > th dose dependent rect. 6 3
706 114.22 wind 7.0 270 < th dose independent rect. 22 5
714 114.25 wind 1.0 270 > th dose independent rect. 3 5
729 114.32 temperature 10.0 270 > th dose dependent rect. 23 14
750 114.39 humidity 50.0 270 > th dose independent rect. 17 15
760 114.43 humidity 90.0 10 < th dose dependent rect. 17 16
762 114.45 atmosphere 995.0 270 > th dose independent rect. 17 15
764 114.46 temperature 10.0 270 > th dose independent rect. 22 5
765 114.46 temperature 30.0 270 < th dose independent rect. 22 5
766 114.46 humidity 50.0 270 > th dose independent rect. 22 5
769 114.46 atmosphere 995.0 270 > th dose independent rect. 22 5
770 114.46 radiation 1.0 270 < th dose independent rect. 22 5
775 114.46 temperature 10.0 270 > th dose independent rect. 3 19
776 114.46 atmosphere 1015.0 270 < th dose independent rect. 3 19
777 114.46 radiation 1.0 270 < th dose dependent rect. 22 5
786 114.49 precipitation 0.1 270 < th dose independent rect. 22 5
788 114.49 precipitation 0.1 270 < th dose dependent rect. 22 5
789 114.50 atmosphere 995.0 270 > th dose independent rect. 8 9
804 114.59 humidity 50.0 270 > th dose dependent rect. 4 3
805 114.60 wind 7.0 270 < th dose independent rect. 22 15
817 114.65 humidity 50.0 30 > th dose independent rect. 9 21
854 114.80 humidity 50.0 4320 > th dose independent rect. 7 3
857 114.81 wind 9.0 270 < th dose independent rect. 17 15
890 114.88 atmosphere 1015.0 90 < th dose independent rect. 5 18
924 114.96 temperature 10.0 90 > th dose independent rect. 5 18
936 114.98 wind 9.0 270 < th dose dependent rect. 22 5
947 115.00 precipitation 0.1 90 < th dose independent rect. 5 18
949 115.00 precipitation 0.1 90 < th dose dependent rect. 5 18