BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0288600 Os12g0288600|AK064558
         (561 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G13030.1  | chr1:4444284-4447278 REVERSE LENGTH=609            158   8e-39

>AT1G13030.1 | chr1:4444284-4447278 REVERSE LENGTH=609
          Length = 608

 Score =  158 bits (399), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 117/338 (34%), Positives = 168/338 (49%), Gaps = 67/338 (19%)

Query: 217 IVPVVVRPGHIRFESAGGESDKSPVKE-IQTTFQWSGTTSKKKGQKWGMDNSNKKSSDIS 275
           +VPV VRPGHIRF+   G  + S   E +     W+G  +KKKGQKWG + S        
Sbjct: 328 VVPVEVRPGHIRFKPLAGTDEASLDSEPLVENVLWNGNMTKKKGQKWGTEKS-------- 379

Query: 276 YHGRITGTDTEVNHHVAGNSKTSDNDFGLASNQKVGESSHVGSASEKIVAEKGKSSSEPL 335
                            G SK    DF   +  +  E+  + +               P+
Sbjct: 380 -----------------GFSKRYAQDFNEDATTQPAEAETLANC--------------PI 408

Query: 336 DFDSLYPLTRLPKEGDLIVYRLVELSSSWCPELSSYRVGKVLIYDPISLRIILLPVPEYP 395
           D++ L   T   K+GD+I YRL+EL+SSW PE+SS+RVGK+  YDP S  + L+PV E+P
Sbjct: 409 DYEQLVAYTGSVKKGDVIAYRLIELTSSWTPEVSSFRVGKISYYDPDSKMVTLMPVQEFP 468

Query: 396 FTAGEKNGEDESEMLV--DMSPYKEDGSLEIEYSSLLDIRLLKDTDSVQPAVS-TPLTET 452
               EK  E++ +  +  D S YKEDGSLEIE+S+LLD+R +K + S    V+ + L E 
Sbjct: 469 I---EKKTEEDDDFCMQPDTSLYKEDGSLEIEFSALLDVRSVKTSSSDSAEVAKSALPEP 525

Query: 453 GIKGGSHAQKPANLDNHKGKIHSEKLPNNTKDPEATQEKTQNTVWEENGEVANDEPAV-- 510
                  A+KP             KL  N +     +E  + + WEE  E  + + A   
Sbjct: 526 ----DQSAKKP-------------KLSANKELQTPAKENGEVSPWEELSEALSAKKAALS 568

Query: 511 -QENGWGTWTPNASTSAWSYRALRSSALGPTLAHLRGK 547
              NGW     ++S  +WSY+ALR SA+GP + +LR +
Sbjct: 569 QANNGWNK-KGSSSGGSWSYKALRGSAMGPVMNYLRSQ 605



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.307    0.126    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 12,077,964
Number of extensions: 527762
Number of successful extensions: 1543
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1539
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 457
Effective length of database: 8,255,305
Effective search space: 3772674385
Effective search space used: 3772674385
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 114 (48.5 bits)