BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0288600 Os12g0288600|AK064558
(561 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0288600 Conserved hypothetical protein 1037 0.0
>Os12g0288600 Conserved hypothetical protein
Length = 561
Score = 1037 bits (2681), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 507/561 (90%), Positives = 507/561 (90%)
Query: 1 MLAIEYKKDDDSNQQEGVQYNHQNVVNAASHYNTRNDDITLKRKCQDGERGSPGTSKKKK 60
MLAIEYKKDDDSNQQEGVQYNHQNVVNAASHYNTRNDDITLKRKCQDGERGSPGTSKKKK
Sbjct: 1 MLAIEYKKDDDSNQQEGVQYNHQNVVNAASHYNTRNDDITLKRKCQDGERGSPGTSKKKK 60
Query: 61 LKVANTGKHTGCSNEDKAHQDQDHSGSKKLKSPCIDDAKKVMLAEADVTLEKEQISKRDN 120
LKVANTGKHTGCSNEDKAHQDQDHSGSKKLKSPCIDDAKKVMLAEADVTLEKEQISKRDN
Sbjct: 61 LKVANTGKHTGCSNEDKAHQDQDHSGSKKLKSPCIDDAKKVMLAEADVTLEKEQISKRDN 120
Query: 121 QTKLNSETKEDDCNTQSDIXXXXXXXXXXXXXXXXXXXXXXXXXXXXHCQEQPTVADCPS 180
QTKLNSETKEDDCNTQSDI HCQEQPTVADCPS
Sbjct: 121 QTKLNSETKEDDCNTQSDIKKVSRSARRKKLKRQLRQKAKEQLKEKEHCQEQPTVADCPS 180
Query: 181 SNNRDVXXXXXXXXXXXXXXFVRHXXXXXXXXXXXXIVPVVVRPGHIRFESAGGESDKSP 240
SNNRDV FVRH IVPVVVRPGHIRFESAGGESDKSP
Sbjct: 181 SNNRDVLPSPSSNQNNSSLPFVRHEADEEESDTSDDIVPVVVRPGHIRFESAGGESDKSP 240
Query: 241 VKEIQTTFQWSGTTSKKKGQKWGMDNSNKKSSDISYHGRITGTDTEVNHHVAGNSKTSDN 300
VKEIQTTFQWSGTTSKKKGQKWGMDNSNKKSSDISYHGRITGTDTEVNHHVAGNSKTSDN
Sbjct: 241 VKEIQTTFQWSGTTSKKKGQKWGMDNSNKKSSDISYHGRITGTDTEVNHHVAGNSKTSDN 300
Query: 301 DFGLASNQKVGESSHVGSASEKIVAEKGKSSSEPLDFDSLYPLTRLPKEGDLIVYRLVEL 360
DFGLASNQKVGESSHVGSASEKIVAEKGKSSSEPLDFDSLYPLTRLPKEGDLIVYRLVEL
Sbjct: 301 DFGLASNQKVGESSHVGSASEKIVAEKGKSSSEPLDFDSLYPLTRLPKEGDLIVYRLVEL 360
Query: 361 SSSWCPELSSYRVGKVLIYDPISLRIILLPVPEYPFTAGEKNGEDESEMLVDMSPYKEDG 420
SSSWCPELSSYRVGKVLIYDPISLRIILLPVPEYPFTAGEKNGEDESEMLVDMSPYKEDG
Sbjct: 361 SSSWCPELSSYRVGKVLIYDPISLRIILLPVPEYPFTAGEKNGEDESEMLVDMSPYKEDG 420
Query: 421 SLEIEYSSLLDIRLLKDTDSVQPAVSTPLTETGIKGGSHAQKPANLDNHKGKIHSEKLPN 480
SLEIEYSSLLDIRLLKDTDSVQPAVSTPLTETGIKGGSHAQKPANLDNHKGKIHSEKLPN
Sbjct: 421 SLEIEYSSLLDIRLLKDTDSVQPAVSTPLTETGIKGGSHAQKPANLDNHKGKIHSEKLPN 480
Query: 481 NTKDPEATQEKTQNTVWEENGEVANDEPAVQENGWGTWTPNASTSAWSYRALRSSALGPT 540
NTKDPEATQEKTQNTVWEENGEVANDEPAVQENGWGTWTPNASTSAWSYRALRSSALGPT
Sbjct: 481 NTKDPEATQEKTQNTVWEENGEVANDEPAVQENGWGTWTPNASTSAWSYRALRSSALGPT 540
Query: 541 LAHLRGKNTKRGRPYNRKYGK 561
LAHLRGKNTKRGRPYNRKYGK
Sbjct: 541 LAHLRGKNTKRGRPYNRKYGK 561
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.307 0.126 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 18,324,513
Number of extensions: 772868
Number of successful extensions: 1895
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1894
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 455
Effective length of database: 11,501,117
Effective search space: 5233008235
Effective search space used: 5233008235
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 159 (65.9 bits)