Os12g0235800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Argininosuccinate synthase (Fragment).
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Os12g0235800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Argininosuccinate synthase (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 42.96 | 0.308 | 11.7 | -0.172 | 0.64 | 0.551 | 0.396 | 0.243 | -0.0059 | 20.4 | 26.33 | 9377 | -- | -- |
| 42.96 | 0.305 | 11.7 | -0.24 | 0.641 | 0.574 | 0.391 | -- | -0.0276 | 20.4 | 26.87 | 9307 | -- | -- |
| 43.43 | 0.307 | 11.7 | -0.169 | 0.64 | 0.549 | -- | 0.277 | 0.00114 | 20.4 | 26.6 | 9340 | -- | -- |
| 43.45 | 0.307 | 11.7 | -0.253 | 0.639 | 0.573 | -- | -- | -0.029 | 20.5 | 26.87 | 9340 | -- | -- |
| 53.54 | 0.341 | 11.6 | -0.131 | -- | 0.98 | -- | 0.602 | 0.144 | -- | 25.17 | 738 | -- | -- |
| 54.63 | 0.346 | 11.6 | -0.0372 | 0.673 | -- | 0.411 | -- | 0.183 | 20.6 | -- | -- | -- | -- |
| 55.17 | 0.348 | 11.6 | -0.0505 | 0.671 | -- | -- | -- | 0.183 | 20.6 | -- | -- | -- | -- |
| 52.98 | 0.339 | 11.6 | -0.26 | -- | 0.986 | -- | -- | 0.104 | -- | 24.97 | 734 | -- | -- |
| 44.96 | 0.312 | 11.7 | -- | 0.62 | 0.525 | -- | -- | 0.0277 | 20.4 | 27.48 | 9339 | -- | -- |
| 80.51 | 0.419 | 11.6 | -0.0526 | -- | -- | -- | -- | 0.177 | -- | -- | -- | -- | -- |
| 55.24 | 0.348 | 11.6 | -- | 0.671 | -- | -- | -- | 0.188 | 20.6 | -- | -- | -- | -- |
| 54.69 | 0.344 | 11.6 | -- | -- | 0.939 | -- | -- | 0.136 | -- | 25 | 719 | -- | -- |
| 80.59 | 0.419 | 11.6 | -- | -- | -- | -- | -- | 0.183 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 42.28 | wind | 7.0 | 43200 | < th | dose dependent | rect. | 6 | 5 |
| 2 | 42.30 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 7 | 2 |
| 12 | 42.41 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 6 | 5 |
| 25 | 42.46 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 24 | 13 |
| 27 | 42.48 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 29 | 42.49 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 6 | 3 |
| 33 | 42.53 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 4 | 4 |
| 34 | 42.53 | atmosphere | 1000.0 | 43200 | < th | dose dependent | sin | 21 | NA |
| 37 | 42.53 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 9 | 12 |
| 38 | 42.53 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 7 | 14 |
| 39 | 42.53 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 5 | 15 |
| 43 | 42.54 | wind | 3.0 | 43200 | > th | dose independent | rect. | 7 | 4 |
| 46 | 42.54 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 10 | 10 |
| 56 | 42.55 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 5 | 2 |
| 57 | 42.55 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 4 | 4 |
| 64 | 42.56 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 98 | 42.59 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 142 | 42.64 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 15 | 2 |
| 154 | 42.65 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 14 | 4 |
| 289 | 42.79 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 294 | 42.80 | wind | 3.0 | 43200 | < th | dose independent | rect. | 7 | 4 |
| 316 | 42.81 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 356 | 42.85 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 387 | 42.89 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 438 | 42.93 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 6 | 3 |
| 478 | 42.96 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 4 | 15 |
| 485 | 42.97 | atmosphere | 1000.0 | 43200 | < th | dose independent | sin | 2 | NA |
| 500 | 42.98 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 18 | 13 |
| 507 | 42.99 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 17 | 16 |
| 524 | 43.00 | atmosphere | 1000.0 | 43200 | > th | dose independent | sin | 2 | NA |
| 537 | 43.01 | wind | 3.0 | 43200 | < th | dose independent | rect. | 3 | 8 |
| 554 | 43.02 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 17 | 16 |
| 672 | 43.11 | wind | 5.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 675 | 43.11 | wind | 1.0 | 43200 | > th | dose independent | rect. | 24 | 12 |
| 759 | 43.15 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 5 | 13 |
| 784 | 43.17 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 18 | 21 |
| 786 | 43.17 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 15 | 3 |
| 792 | 43.17 | temperature | 30.0 | 14400 | > th | dose dependent | rect. | 17 | 16 |
| 796 | 43.18 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 18 | 3 |
| 797 | 43.18 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 18 | 5 |
| 825 | 43.20 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 18 | 8 |
| 836 | 43.20 | atmosphere | 1000.0 | 43200 | < th | dose dependent | no | NA | NA |
| 851 | 43.21 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 17 | 15 |
| 860 | 43.21 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 15 | 18 |
| 871 | 43.22 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 873 | 43.22 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 17 | 2 |
| 920 | 43.23 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 16 | 2 |
| 927 | 43.23 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 17 | 13 |
| 939 | 43.23 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 18 | 21 |
| 943 | 43.23 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 16 | 2 |
| 969 | 43.24 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 5 | 16 |
| 977 | 43.25 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 15 | 18 |
| 990 | 43.26 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 17 | 4 |