BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0235800 Os12g0235800|AK071066
         (481 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G24830.1  | chr4:12793085-12795857 REVERSE LENGTH=495          744   0.0  

>AT4G24830.1 | chr4:12793085-12795857 REVERSE LENGTH=495
          Length = 494

 Score =  744 bits (1920), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/448 (79%), Positives = 399/448 (89%), Gaps = 9/448 (2%)

Query: 33  GSIVRVQQLSG-KGSKSQAIRCAMPSASEHGGISTATASSSDQKKGGLRGKLNKVVLAYS 91
           G+ V    ++G +  K+QAIR  +            TA ++D K+ GLRGKL KVVLAYS
Sbjct: 53  GNAVVTGHVTGSRSCKNQAIRAVLSG--------DGTALTTDSKEAGLRGKLKKVVLAYS 104

Query: 92  GGLDTSVIVPWLRENYGCEVVCFTADVGQGDIELEGLEKKAKASGASQLVVKDLKEEFVS 151
           GGLDTSVIVPWL+ENYGCEVVCFTADVGQG  ELEGLE+KAKASGASQLVVKDL EEFV 
Sbjct: 105 GGLDTSVIVPWLKENYGCEVVCFTADVGQGIKELEGLEQKAKASGASQLVVKDLTEEFVK 164

Query: 152 EYIYPCLRAGAVYERKYLLGTSMARPVIAKAMVDVAKEVGADAVAHGCTGKGNDQVRFEL 211
           ++I+PCLRAGA+YERKYLLGTSMARPVIAKAMVDVA EVGADAVAHGCTGKGNDQVRFEL
Sbjct: 165 DFIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAAEVGADAVAHGCTGKGNDQVRFEL 224

Query: 212 TFYALNPELKVVAPWREWDITGREDAIEYAKKHNVPIPVTKKSIYSRDRNLWHLSHEGDI 271
           TF++LNPELKVVAPWREW+I GREDAIEYAKKHNVP+PVTKKSIYSRDRNLWHLSHEGD+
Sbjct: 225 TFFSLNPELKVVAPWREWEIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDL 284

Query: 272 LEDPANEPKEDMYMMSVAPENAPSKPEYLEIGIIAGVPVSINGKDLSPASLLAKLNEIGG 331
           LEDPANEPK+DMYMMSV PE+AP +PEY+EIGI +G+PV++NGK LSPA+LLA+LN IGG
Sbjct: 285 LEDPANEPKKDMYMMSVDPEDAPDQPEYIEIGIESGLPVALNGKALSPATLLAELNTIGG 344

Query: 332 KHGIGRIDMVENRLVGMKSRGVYETPGGTIMAAAVRELESLTLDRETMQWKDMLALKYAE 391
           KHGIGRIDMVENRLVGMKSRGVYETPGGTI+ AAV+ELESLTLDRE++Q KD LALKYAE
Sbjct: 345 KHGIGRIDMVENRLVGMKSRGVYETPGGTILFAAVQELESLTLDRESIQVKDTLALKYAE 404

Query: 392 LVYAGRWFDPLRQSIDAFMENITATTTGSVTLKLYKGSVNVASRKSPYSLYREDISSFEN 451
           +VYAGRWFDPLR+S+DAFME IT TTTGSVTLKLYKGSV+V  R+SP SLYR+DISSFE 
Sbjct: 405 MVYAGRWFDPLRESMDAFMEKITETTTGSVTLKLYKGSVSVTGRQSPNSLYRQDISSFEG 464

Query: 452 GEIYNQADAEGFIRLYGLPTRVRAMLEK 479
            EIYNQADA GFIRLYGLP ++RAML+K
Sbjct: 465 SEIYNQADAAGFIRLYGLPMKIRAMLKK 492



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.315    0.133    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,261,831
Number of extensions: 442359
Number of successful extensions: 1131
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1131
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 379
Effective length of database: 8,310,137
Effective search space: 3149541923
Effective search space used: 3149541923
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 114 (48.5 bits)