BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0235800 Os12g0235800|AK071066
         (481 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os12g0235800  Similar to Argininosuccinate synthase (Fragment)    990   0.0  
Os11g0303050                                                      230   1e-60

>Os12g0235800 Similar to Argininosuccinate synthase (Fragment)
          Length = 481

 Score =  990 bits (2559), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 481/481 (100%), Positives = 481/481 (100%)

Query: 1   MAHALGCGAATAPAGVGLLHHHEKAGALFSAAGSIVRVQQLSGKGSKSQAIRCAMPSASE 60
           MAHALGCGAATAPAGVGLLHHHEKAGALFSAAGSIVRVQQLSGKGSKSQAIRCAMPSASE
Sbjct: 1   MAHALGCGAATAPAGVGLLHHHEKAGALFSAAGSIVRVQQLSGKGSKSQAIRCAMPSASE 60

Query: 61  HGGISTATASSSDQKKGGLRGKLNKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQ 120
           HGGISTATASSSDQKKGGLRGKLNKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQ
Sbjct: 61  HGGISTATASSSDQKKGGLRGKLNKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQ 120

Query: 121 GDIELEGLEKKAKASGASQLVVKDLKEEFVSEYIYPCLRAGAVYERKYLLGTSMARPVIA 180
           GDIELEGLEKKAKASGASQLVVKDLKEEFVSEYIYPCLRAGAVYERKYLLGTSMARPVIA
Sbjct: 121 GDIELEGLEKKAKASGASQLVVKDLKEEFVSEYIYPCLRAGAVYERKYLLGTSMARPVIA 180

Query: 181 KAMVDVAKEVGADAVAHGCTGKGNDQVRFELTFYALNPELKVVAPWREWDITGREDAIEY 240
           KAMVDVAKEVGADAVAHGCTGKGNDQVRFELTFYALNPELKVVAPWREWDITGREDAIEY
Sbjct: 181 KAMVDVAKEVGADAVAHGCTGKGNDQVRFELTFYALNPELKVVAPWREWDITGREDAIEY 240

Query: 241 AKKHNVPIPVTKKSIYSRDRNLWHLSHEGDILEDPANEPKEDMYMMSVAPENAPSKPEYL 300
           AKKHNVPIPVTKKSIYSRDRNLWHLSHEGDILEDPANEPKEDMYMMSVAPENAPSKPEYL
Sbjct: 241 AKKHNVPIPVTKKSIYSRDRNLWHLSHEGDILEDPANEPKEDMYMMSVAPENAPSKPEYL 300

Query: 301 EIGIIAGVPVSINGKDLSPASLLAKLNEIGGKHGIGRIDMVENRLVGMKSRGVYETPGGT 360
           EIGIIAGVPVSINGKDLSPASLLAKLNEIGGKHGIGRIDMVENRLVGMKSRGVYETPGGT
Sbjct: 301 EIGIIAGVPVSINGKDLSPASLLAKLNEIGGKHGIGRIDMVENRLVGMKSRGVYETPGGT 360

Query: 361 IMAAAVRELESLTLDRETMQWKDMLALKYAELVYAGRWFDPLRQSIDAFMENITATTTGS 420
           IMAAAVRELESLTLDRETMQWKDMLALKYAELVYAGRWFDPLRQSIDAFMENITATTTGS
Sbjct: 361 IMAAAVRELESLTLDRETMQWKDMLALKYAELVYAGRWFDPLRQSIDAFMENITATTTGS 420

Query: 421 VTLKLYKGSVNVASRKSPYSLYREDISSFENGEIYNQADAEGFIRLYGLPTRVRAMLEKG 480
           VTLKLYKGSVNVASRKSPYSLYREDISSFENGEIYNQADAEGFIRLYGLPTRVRAMLEKG
Sbjct: 421 VTLKLYKGSVNVASRKSPYSLYREDISSFENGEIYNQADAEGFIRLYGLPTRVRAMLEKG 480

Query: 481 I 481
           I
Sbjct: 481 I 481



>Os11g0303050 
          Length = 238

 Score =  230 bits (587), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 109/127 (85%), Positives = 118/127 (92%)

Query: 332 KHGIGRIDMVENRLVGMKSRGVYETPGGTIMAAAVRELESLTLDRETMQWKDMLALKYAE 391
           +HGIGRIDMVENRLVGMKS GVY+TPG TIMAAAVRELESLTLDRE MQWKD+LALKY +
Sbjct: 86  QHGIGRIDMVENRLVGMKSHGVYKTPGDTIMAAAVRELESLTLDREIMQWKDILALKYTK 145

Query: 392 LVYAGRWFDPLRQSIDAFMENITATTTGSVTLKLYKGSVNVASRKSPYSLYREDISSFEN 451
           LVY GRWFDPL+QS+DAFME +T TTTGSVTLKLYKGSVN+ASRKSPY LY EDISSFEN
Sbjct: 146 LVYVGRWFDPLQQSMDAFMEKVTETTTGSVTLKLYKGSVNIASRKSPYILYGEDISSFEN 205

Query: 452 GEIYNQA 458
           G+IYNQA
Sbjct: 206 GKIYNQA 212




 Score = 86.3 bits (212), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 42/53 (79%), Positives = 46/53 (86%)

Query: 340 MVENRLVGMKSRGVYETPGGTIMAAAVRELESLTLDRETMQWKDMLALKYAEL 392
           MVENRLVGMKS  VYET G TIMAAA+RELESLTLDRE MQWKD+LALK  ++
Sbjct: 1   MVENRLVGMKSHSVYETLGDTIMAAAIRELESLTLDREIMQWKDILALKIRQV 53



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.133    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,489,425
Number of extensions: 718325
Number of successful extensions: 1990
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1990
Number of HSP's successfully gapped: 3
Length of query: 481
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 376
Effective length of database: 11,553,331
Effective search space: 4344052456
Effective search space used: 4344052456
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 158 (65.5 bits)