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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0227400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Allyl alcohol dehydrogenase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.91 (0.0279) R2 : 0.299
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 6.58 (0.479) R2dE : 0.294 R2E : 0.3
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0977 (0.059) R2dN8 : -0.00068 R2N8 : 0.00515
σ : 0.524
deviance : 126.82
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_____
C
peak time of C : --
E
wheather : humidity
threshold : 89.7
memory length : 49
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 4.4
open length of G : 0.834

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
130.21 0.536 2.93 -0.289 0.0809 19.5 0.498 -56.7 0.0645 6.69 90.28 106 4.03 1
136.14 0.543 2.91 0.0228 0.151 5.96 0.65 -- 0.0857 5.47 76.48 104 4.12 2.17
130.62 0.532 2.93 -0.273 0.0986 19 -- -54.4 0.0634 8.88 90.34 107 4.03 0.976
130.31 0.532 2.86 0.0245 0.157 6.97 -- -- 0.155 10.6 89.37 42 4.45 0.9
131.02 0.533 2.93 -0.262 -- 18 -- -49.9 0.0649 -- 90.48 109 4.03 0.95
176.15 0.622 2.88 -0.0483 0.209 -- 0.706 -- 0.119 6.47 -- -- -- --
177.37 0.624 2.88 -0.0379 0.213 -- -- -- 0.117 6.86 -- -- -- --
129.68 0.53 2.87 -0.0563 -- 6.6 -- -- 0.148 -- 89.44 42 4.43 0.889
129.06 0.529 2.87 -- 0.0821 6.67 -- -- 0.0859 9.52 89.47 42 4.45 0.899
179.74 0.626 2.89 -0.0333 -- -- -- -- 0.121 -- -- -- -- --
177.41 0.623 2.88 -- 0.212 -- -- -- 0.121 6.87 -- -- -- --
126.82 0.524 2.91 -- -- 6.58 -- -- 0.0977 -- 89.7 49 4.4 0.834
179.77 0.626 2.88 -- -- -- -- -- 0.125 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 133.35 humidity 90 90 < th dose dependent rect. 4 1
2 134.70 humidity 80 10 < th dose independent rect. 5 1
7 134.70 humidity 80 10 < th dose dependent rect. 5 1
29 141.10 wind 3 10 > th dose dependent rect. 6 1
34 144.87 wind 3 10 > th dose independent rect. 5 2
94 156.94 humidity 80 10 < th dose independent rect. 2 5
123 158.55 atmosphere 1005 90 > th dose dependent rect. 4 1
149 160.58 atmosphere 1005 10 > th dose dependent rect. 4 2
212 163.92 humidity 80 1440 < th dose dependent rect. 22 8
216 164.08 temperature 25 30 > th dose independent rect. 4 1
225 164.33 humidity 80 1440 > th dose independent rect. 4 1
241 164.47 humidity 80 1440 < th dose independent rect. 23 3
248 164.64 humidity 80 1440 < th dose dependent rect. 23 3
255 164.69 humidity 80 1440 < th dose independent rect. 22 8
256 164.69 temperature 25 90 > th dose dependent rect. 4 1
264 164.90 temperature 20 270 < th dose dependent rect. 2 1
292 165.59 humidity 80 1440 > th dose independent rect. 23 7
324 166.10 temperature 20 10 < th dose dependent rect. 6 1
359 166.42 humidity 80 1440 > th dose independent rect. 23 3
389 166.64 humidity 80 720 < th dose independent rect. 18 12
406 166.80 temperature 20 720 > th dose independent rect. 12 13
415 166.83 temperature 20 10 < th dose dependent rect. 4 13
436 166.94 temperature 20 10 < th dose dependent rect. 4 9
442 166.96 temperature 20 10 < th dose dependent rect. 4 3
446 166.99 humidity 70 720 > th dose dependent rect. 22 3
451 167.02 humidity 50 720 > th dose dependent rect. 21 6
452 167.03 temperature 20 720 > th dose independent rect. 14 10
499 167.29 temperature 20 10 < th dose dependent rect. 4 6
522 167.40 atmosphere 1005 90 > th dose independent rect. 4 1
523 167.40 radiation 1 720 < th dose independent rect. 10 2
525 167.40 radiation 1 720 < th dose dependent rect. 10 2
605 167.72 temperature 20 720 > th dose independent rect. 23 1
613 167.77 temperature 20 720 > th dose independent rect. 21 4
619 167.79 radiation 1 720 > th dose independent rect. 6 11
632 167.85 temperature 20 90 < th dose dependent rect. 4 1
665 167.94 temperature 30 90 < th dose dependent rect. 4 1
678 168.01 temperature 20 720 < th dose independent rect. 18 7
707 168.09 temperature 20 10 < th dose dependent sin 23 NA
754 168.20 temperature 20 720 > th dose independent rect. 5 19
759 168.22 humidity 60 14400 > th dose independent rect. 5 2
790 168.35 temperature 20 720 < th dose independent sin 18 NA
798 168.38 wind 7 1440 < th dose independent rect. 5 1
800 168.38 temperature 10 1440 > th dose independent rect. 5 1
803 168.38 temperature 30 1440 < th dose independent rect. 5 1
807 168.38 humidity 50 1440 > th dose independent rect. 5 1
816 168.38 atmosphere 995 1440 > th dose independent rect. 5 1
817 168.38 atmosphere 1015 1440 < th dose independent rect. 5 1
818 168.38 radiation 20 1440 < th dose independent rect. 5 1
827 168.38 temperature 10 1440 > th dose independent rect. 6 23
837 168.42 temperature 20 720 < th dose independent rect. 18 2
839 168.42 humidity 50 720 > th dose dependent rect. 22 9
844 168.44 humidity 80 720 < th dose independent sin 11 NA
857 168.46 atmosphere 995 30 > th dose dependent rect. 11 19
884 168.52 temperature 20 720 > th dose independent sin 18 NA
888 168.52 humidity 50 270 > th dose dependent rect. 21 12
891 168.53 temperature 20 270 < th dose dependent rect. 23 6
896 168.54 radiation 1 720 < th dose dependent rect. 1 15
917 168.59 humidity 80 720 > th dose independent rect. 11 2
937 168.62 atmosphere 995 30 > th dose dependent rect. 19 11
955 168.68 temperature 10 30 > th dose dependent rect. 5 23
957 168.69 radiation 1 720 < th dose dependent rect. 24 23
959 168.70 temperature 20 720 < th dose independent rect. 8 12
990 168.77 radiation 1 1440 < th dose independent rect. 24 5