BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0227400 Os12g0227400|J100082K03
(62 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G16990.1 | chr5:5581831-5583849 REVERSE LENGTH=344 54 1e-08
AT5G17000.1 | chr5:5584983-5586991 REVERSE LENGTH=346 54 2e-08
AT5G16970.1 | chr5:5576291-5578001 REVERSE LENGTH=346 54 2e-08
AT5G38000.1 | chr5:15141810-15143367 FORWARD LENGTH=354 53 3e-08
AT5G37940.1 | chr5:15107312-15108820 FORWARD LENGTH=354 53 3e-08
AT3G03080.1 | chr3:698530-700278 REVERSE LENGTH=351 51 1e-07
AT1G26320.1 | chr1:9105240-9107029 FORWARD LENGTH=352 51 1e-07
AT5G37980.1 | chr5:15131405-15132940 FORWARD LENGTH=354 51 1e-07
AT5G16980.2 | chr5:5579202-5580889 REVERSE LENGTH=306 50 2e-07
AT5G16960.1 | chr5:5574537-5575884 REVERSE LENGTH=347 47 2e-06
AT3G59845.1 | chr3:22106421-22107785 REVERSE LENGTH=347 47 3e-06
>AT5G16990.1 | chr5:5581831-5583849 REVERSE LENGTH=344
Length = 343
Score = 54.3 bits (129), Expect = 1e-08, Method: Composition-based stats.
Identities = 24/29 (82%), Positives = 27/29 (93%)
Query: 22 QVNLLKTKFGFDDAFNYKKELDLEAALKR 50
+V+LLKTKFGFDDAFNYK+E DL AALKR
Sbjct: 190 KVDLLKTKFGFDDAFNYKEESDLSAALKR 218
>AT5G17000.1 | chr5:5584983-5586991 REVERSE LENGTH=346
Length = 345
Score = 53.9 bits (128), Expect = 2e-08, Method: Composition-based stats.
Identities = 24/29 (82%), Positives = 27/29 (93%)
Query: 22 QVNLLKTKFGFDDAFNYKKELDLEAALKR 50
+V+LLKTKFGFDDAFNYK+E DL AALKR
Sbjct: 192 KVDLLKTKFGFDDAFNYKEEPDLSAALKR 220
>AT5G16970.1 | chr5:5576291-5578001 REVERSE LENGTH=346
Length = 345
Score = 53.9 bits (128), Expect = 2e-08, Method: Composition-based stats.
Identities = 24/29 (82%), Positives = 27/29 (93%)
Query: 22 QVNLLKTKFGFDDAFNYKKELDLEAALKR 50
+V+LLKTKFGFDDAFNYK+E DL AALKR
Sbjct: 192 KVDLLKTKFGFDDAFNYKEESDLTAALKR 220
>AT5G38000.1 | chr5:15141810-15143367 FORWARD LENGTH=354
Length = 353
Score = 52.8 bits (125), Expect = 3e-08, Method: Composition-based stats.
Identities = 23/29 (79%), Positives = 27/29 (93%)
Query: 22 QVNLLKTKFGFDDAFNYKKELDLEAALKR 50
+V+LLKTKFG+DDAFNYK+E DL AALKR
Sbjct: 200 KVDLLKTKFGYDDAFNYKEEKDLSAALKR 228
>AT5G37940.1 | chr5:15107312-15108820 FORWARD LENGTH=354
Length = 353
Score = 52.8 bits (125), Expect = 3e-08, Method: Composition-based stats.
Identities = 23/29 (79%), Positives = 27/29 (93%)
Query: 22 QVNLLKTKFGFDDAFNYKKELDLEAALKR 50
+V+LLKTKFG+DDAFNYK+E DL AALKR
Sbjct: 200 KVDLLKTKFGYDDAFNYKEEKDLSAALKR 228
>AT3G03080.1 | chr3:698530-700278 REVERSE LENGTH=351
Length = 350
Score = 51.2 bits (121), Expect = 1e-07, Method: Composition-based stats.
Identities = 23/29 (79%), Positives = 25/29 (86%)
Query: 22 QVNLLKTKFGFDDAFNYKKELDLEAALKR 50
+V+LLK KFGFDDAFNYK E DL AALKR
Sbjct: 197 KVDLLKNKFGFDDAFNYKAEPDLNAALKR 225
>AT1G26320.1 | chr1:9105240-9107029 FORWARD LENGTH=352
Length = 351
Score = 51.2 bits (121), Expect = 1e-07, Method: Composition-based stats.
Identities = 23/29 (79%), Positives = 25/29 (86%)
Query: 22 QVNLLKTKFGFDDAFNYKKELDLEAALKR 50
+V LLKTKFGFDDAFNYK+E D AALKR
Sbjct: 198 KVYLLKTKFGFDDAFNYKEEKDFSAALKR 226
>AT5G37980.1 | chr5:15131405-15132940 FORWARD LENGTH=354
Length = 353
Score = 50.8 bits (120), Expect = 1e-07, Method: Composition-based stats.
Identities = 22/29 (75%), Positives = 27/29 (93%)
Query: 22 QVNLLKTKFGFDDAFNYKKELDLEAALKR 50
+V+LLKTKFG+D+AFNYK+E DL AALKR
Sbjct: 200 KVDLLKTKFGYDEAFNYKEEHDLSAALKR 228
>AT5G16980.2 | chr5:5579202-5580889 REVERSE LENGTH=306
Length = 305
Score = 50.1 bits (118), Expect = 2e-07, Method: Composition-based stats.
Identities = 23/29 (79%), Positives = 26/29 (89%)
Query: 22 QVNLLKTKFGFDDAFNYKKELDLEAALKR 50
+V+LLKTKFGFD AFNYK+E DL AALKR
Sbjct: 152 KVDLLKTKFGFDYAFNYKEEPDLSAALKR 180
>AT5G16960.1 | chr5:5574537-5575884 REVERSE LENGTH=347
Length = 346
Score = 47.4 bits (111), Expect = 2e-06, Method: Composition-based stats.
Identities = 21/29 (72%), Positives = 25/29 (86%)
Query: 22 QVNLLKTKFGFDDAFNYKKELDLEAALKR 50
+V+LLK KFGFDDAFNYK+E +L ALKR
Sbjct: 193 KVDLLKNKFGFDDAFNYKEEHNLIGALKR 221
>AT3G59845.1 | chr3:22106421-22107785 REVERSE LENGTH=347
Length = 346
Score = 46.6 bits (109), Expect = 3e-06, Method: Composition-based stats.
Identities = 20/29 (68%), Positives = 26/29 (89%)
Query: 22 QVNLLKTKFGFDDAFNYKKELDLEAALKR 50
+V+LL KFG+DDAFNYK+E DL++ALKR
Sbjct: 195 KVDLLLNKFGYDDAFNYKEEPDLDSALKR 223
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.139 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 940,544
Number of extensions: 21766
Number of successful extensions: 56
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 11
Length of query: 62
Length of database: 11,106,569
Length adjustment: 35
Effective length of query: 27
Effective length of database: 10,147,009
Effective search space: 273969243
Effective search space used: 273969243
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 104 (44.7 bits)