FiT-DB / Search/ Help/ Sample detail

Os12g0224000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Diacylglycerol kinase 1 (EC 2.7.1.107) (Diglyceride kinase 1) (DGK 1) (DAG kinase 1).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.5 (0.0204) R2 : 0.312
β1 : 0.856 (0.0746) R2dD : 0.206 R2D : 0.0809
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.465 (0.0435) R2dN8 : 0.231 R2N8 : 0.106
σ : 0.382
deviance : 66.93
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
44.27 0.313 10.5 1.09 0.0852 -1.18 -0.974 -2.31 0.363 10.9 1.7 4419 -- --
50.3 0.33 10.5 0.917 0.0016 -0.837 -0.469 -- 0.34 10.2 3.249 4487 -- --
47.39 0.321 10.4 1.12 0.225 -1.27 -- -2.8 0.407 12 0.9476 4334 -- --
50.71 0.332 10.6 0.639 0.0358 -0.918 -- -- 0.257 7.67 3.199 4501 -- --
47.9 0.322 10.5 1.02 -- -1.42 -- -2.75 0.368 -- 1.078 5875 -- --
61.51 0.368 10.5 0.89 0.231 -- -0.677 -- 0.47 11.7 -- -- -- --
63.41 0.373 10.5 0.864 0.237 -- -- -- 0.469 12.3 -- -- -- --
50.5 0.331 10.5 0.634 -- -0.95 -- -- 0.26 -- 2.82 4479 -- --
49.26 0.327 10.5 -- 0.0822 -0.919 -- -- 0.202 7.62 0.9211 42141 -- --
66.93 0.382 10.5 0.856 -- -- -- -- 0.465 -- -- -- -- --
83.07 0.426 10.5 -- 0.225 -- -- -- 0.372 12.1 -- -- -- --
48.72 0.325 10.6 -- -- -1.02 -- -- 0.0897 -- 1.26 40675 -- --
86.26 0.433 10.5 -- -- -- -- -- 0.37 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 41.20 radiation 1 14400 < th dose dependent rect. 18 11
3 41.23 radiation 1 14400 < th dose dependent rect. 18 8
5 41.24 radiation 1 14400 < th dose dependent rect. 18 6
7 41.25 radiation 1 14400 < th dose dependent rect. 18 1
15 41.42 radiation 1 43200 > th dose independent rect. 18 1
25 41.42 radiation 40 14400 > th dose dependent rect. 15 18
30 41.47 radiation 1 1440 < th dose dependent rect. 18 11
33 41.48 radiation 30 14400 > th dose independent rect. 16 16
53 41.77 radiation 1 14400 < th dose independent rect. 18 11
86 41.87 radiation 1 14400 < th dose independent rect. 18 1
96 41.90 radiation 40 14400 > th dose dependent rect. 8 1
97 41.91 atmosphere 1005 43200 > th dose independent rect. 15 2
113 41.92 radiation 20 14400 > th dose dependent rect. 16 15
120 41.98 radiation 1 1440 < th dose dependent rect. 18 1
130 42.07 wind 3 43200 > th dose dependent rect. 11 1
136 42.26 wind 5 43200 > th dose independent rect. 11 1
140 42.33 wind 5 43200 < th dose independent rect. 11 2
146 42.37 radiation 1 43200 < th dose dependent rect. 24 5
147 42.37 radiation 1 43200 < th dose dependent rect. 22 7
159 42.46 wind 3 43200 > th dose dependent rect. 10 3
165 42.50 radiation 30 14400 < th dose independent rect. 15 17
166 42.51 atmosphere 1005 43200 < th dose independent rect. 16 1
186 42.60 radiation 30 14400 > th dose dependent rect. 15 2
216 42.70 radiation 30 14400 > th dose independent rect. 7 1
264 42.78 atmosphere 1005 43200 > th dose independent rect. 18 1
296 42.87 wind 7 43200 < th dose independent rect. 5 8
302 42.90 wind 9 43200 < th dose dependent rect. 11 1
305 42.93 radiation 30 14400 < th dose independent rect. 15 2
312 42.94 radiation 30 14400 < th dose independent rect. 15 13
318 42.95 radiation 30 14400 < th dose independent rect. 15 10
327 42.96 radiation 30 14400 < th dose independent rect. 15 8
340 42.99 wind 7 43200 < th dose independent rect. 4 10
351 43.03 wind 7 43200 > th dose independent rect. 5 8
359 43.06 radiation 40 4320 < th dose independent rect. 8 1
373 43.11 wind 7 43200 < th dose independent rect. 24 14
385 43.14 wind 7 43200 > th dose independent rect. 3 11
410 43.23 wind 7 43200 > th dose independent rect. 24 14
427 43.29 radiation 40 4320 > th dose independent rect. 15 18
434 43.32 atmosphere 1010 43200 < th dose independent rect. 7 1
485 43.47 humidity 90 43200 > th dose independent rect. 22 1
490 43.47 radiation 40 4320 < th dose independent rect. 20 13
496 43.48 radiation 40 4320 < th dose independent rect. 22 11
499 43.48 humidity 90 43200 > th dose dependent rect. 4 20
512 43.52 radiation 1 1440 > th dose dependent rect. 18 12
514 43.53 humidity 90 43200 > th dose independent rect. 9 2
517 43.53 humidity 90 43200 > th dose dependent rect. 3 16
555 43.57 humidity 90 43200 > th dose dependent rect. 4 13
560 43.58 radiation 1 14400 < th dose dependent sin 13 NA
572 43.60 radiation 40 1440 < th dose dependent rect. 20 10
574 43.60 radiation 1 14400 > th dose dependent rect. 17 12
583 43.61 humidity 90 43200 > th dose dependent rect. 8 17
589 43.63 humidity 90 43200 > th dose dependent sin 2 NA
592 43.63 humidity 90 43200 > th dose dependent rect. 4 7
598 43.64 radiation 1 14400 > th dose dependent rect. 17 2
623 43.66 humidity 90 43200 > th dose dependent rect. 22 1
638 43.68 humidity 90 43200 < th dose independent rect. 9 2
640 43.68 humidity 90 43200 > th dose independent rect. 3 21
642 43.68 humidity 90 43200 > th dose dependent rect. 8 3
653 43.69 wind 5 43200 > th dose dependent rect. 5 9
686 43.72 humidity 90 43200 > th dose independent rect. 8 16
695 43.73 humidity 90 43200 > th dose dependent no NA NA
696 43.73 atmosphere 1005 43200 > th dose dependent rect. 4 1
702 43.73 humidity 90 43200 > th dose dependent rect. 7 23
707 43.74 humidity 90 43200 > th dose dependent sin 18 NA
708 43.74 radiation 40 4320 > th dose dependent rect. 13 1
712 43.74 humidity 90 43200 > th dose dependent rect. 15 10
714 43.74 humidity 90 43200 > th dose dependent rect. 15 22
724 43.75 humidity 90 43200 > th dose dependent rect. 21 23
734 43.76 humidity 90 43200 > th dose dependent rect. 18 6
744 43.76 humidity 90 43200 > th dose dependent rect. 11 23
753 43.77 radiation 1 14400 < th dose independent rect. 18 19
781 43.78 radiation 1 14400 < th dose independent rect. 18 16
805 43.79 radiation 1 14400 > th dose independent rect. 18 20
847 43.80 humidity 90 43200 > th dose independent rect. 3 8
848 43.80 radiation 1 14400 > th dose independent rect. 18 16
877 43.81 radiation 40 1440 < th dose dependent rect. 22 8
891 43.82 humidity 80 43200 > th dose dependent rect. 10 1
901 43.82 radiation 1 14400 < th dose dependent rect. 9 20
913 43.83 humidity 90 43200 > th dose independent rect. 2 18
962 43.85 wind 9 14400 > th dose independent rect. 16 1
994 43.86 humidity 90 43200 > th dose dependent rect. 5 1